RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ITSN1Q15811 1721 aa12.17□□□□□ -0.46
CUX1-206ENST00000437600 CPSF1Q10570 1443 aaKnown RBP12.17□□□□□ -0.46
CUX1-206ENST00000437600 ADGRL3Q9HAR2 1447 aa12.17□□□□□ -0.46
CUX1-206ENST00000437600 TRIM35Q9UPQ4 493 aa12.17□□□□□ -0.46
CUX1-206ENST00000437600 PRKAR2BP31323 418 aa12.16□□□□□ -0.46
CUX1-206ENST00000437600 PHACTR3Q96KR7 559 aa12.16□□□□□ -0.46
CUX1-206ENST00000437600 FMN2Q9NZ56 1722 aa12.16□□□□□ -0.46
CUX1-206ENST00000437600 NWD1Q149M9 1564 aa12.16□□□□□ -0.46
CUX1-206ENST00000437600 XIRP1Q702N8 1843 aaKnown RBP12.16□□□□□ -0.46
CUX1-206ENST00000437600 PLEKHF1Q96S99 279 aa12.16□□□□□ -0.46
CUX1-206ENST00000437600 CDC42BPGQ6DT37 1551 aa12.15□□□□□ -0.46
CUX1-206ENST00000437600 TOPAZ1Q8N9V7 1692 aa12.15□□□□□ -0.46
CUX1-206ENST00000437600 SMC4Q9NTJ3 1288 aa12.15□□□□□ -0.46
CUX1-206ENST00000437600 EDC4Q6P2E9 1401 aaKnown RBP12.15□□□□□ -0.46
CUX1-206ENST00000437600 LMOD2Q6P5Q4 547 aa12.15□□□□□ -0.46
CUX1-206ENST00000437600 TTC21BQ7Z4L5 1316 aa12.15□□□□□ -0.46
CUX1-206ENST00000437600 FAM161AQ3B820 660 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 WDR63Q8IWG1 891 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 SSH1Q8WYL5 1049 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 PHF23Q9BUL5 403 aaPredicted RBP12.14□□□□□ -0.47
CUX1-206ENST00000437600 AKAP12Q02952 1782 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 PDE3AQ14432 1141 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 C19orf44Q9H6X5 657 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 PHF8Q9UPP1 1060 aa12.14□□□□□ -0.47
CUX1-206ENST00000437600 ATF3P18847 181 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 KIF20BQ96Q89 1820 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 NEFMP07197 916 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 FTSJ3Q8IY81 847 aaKnown RBP12.13□□□□□ -0.47
CUX1-206ENST00000437600 ZNF692Q9BU19 519 aaPredicted RBP12.13□□□□□ -0.47
CUX1-206ENST00000437600 COL3A1P02461 1466 aaPredicted RBP12.13□□□□□ -0.47
CUX1-206ENST00000437600 MON2Q7Z3U7 1717 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 DCTN1Q14203 1278 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 AEBP2Q6ZN18 517 aaPredicted RBP12.13□□□□□ -0.47
CUX1-206ENST00000437600 PKNOX2Q96KN3 472 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 MYH16Q9H6N6 1097 aa12.13□□□□□ -0.47
CUX1-206ENST00000437600 MAP2P11137 1827 aaKnown RBP12.13□□□□□ -0.47
CUX1-206ENST00000437600 PLEKHG3A1L390 1219 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 HSP90AB2PQ58FF8 381 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 AEBP1Q8IUX7 1158 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 NOB1Q9ULX3 412 aaKnown RBP12.12□□□□□ -0.47
CUX1-206ENST00000437600 IQSEC2Q5JU85 1478 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 FAM83GA6ND36 823 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 ITPRIPQ8IWB1 547 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 USP6P35125 1406 aa12.12□□□□□ -0.47
CUX1-206ENST00000437600 LRRC7Q96NW7 1537 aa12.11□□□□□ -0.47
CUX1-206ENST00000437600 TRIM27P14373 513 aa12.11□□□□□ -0.47
CUX1-206ENST00000437600 PSME1Q06323 249 aa12.11□□□□□ -0.47
CUX1-206ENST00000437600 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
CUX1-206ENST00000437600 IL13P35225 146 aa12.11□□□□□ -0.47
CUX1-206ENST00000437600 RTL5Q5HYW3 569 aaPredicted RBP12.11□□□□□ -0.47
CUX1-206ENST00000437600 PNPLA6Q8IY17 1366 aa12.1□□□□□ -0.47
CUX1-206ENST00000437600 PDZRN3Q9UPQ7 1066 aa12.1□□□□□ -0.47
CUX1-206ENST00000437600 ZBTB7CA1YPR0 619 aa12.1□□□□□ -0.47
CUX1-206ENST00000437600 TSPYL6Q8N831 410 aa12.1□□□□□ -0.47
CUX1-206ENST00000437600 ABTB2Q8N961 1025 aa12.1□□□□□ -0.47
CUX1-206ENST00000437600 NLRP6P59044 892 aa12.09□□□□□ -0.47
CUX1-206ENST00000437600 DZIP1LQ8IYY4 767 aaKnown RBP12.09□□□□□ -0.47
CUX1-206ENST00000437600 MSH6P52701 1360 aa12.09□□□□□ -0.47
CUX1-206ENST00000437600 ZKSCAN2Q63HK3 967 aa12.09□□□□□ -0.47
CUX1-206ENST00000437600 NGEFQ8N5V2 710 aa12.09□□□□□ -0.47
CUX1-206ENST00000437600 C1orf167Q5SNV9 1468 aa12.09□□□□□ -0.47
CUX1-206ENST00000437600 FCHSD2O94868 740 aa12.08□□□□□ -0.47
CUX1-206ENST00000437600 SULT6B1Q6IMI4 303 aa12.08□□□□□ -0.47
CUX1-206ENST00000437600 ANKRD26Q9UPS8 1709 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 CCDC27Q2M243 656 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 NRKQ7Z2Y5 1582 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 EIF4A2Q14240 407 aaKnown RBP12.08□□□□□ -0.48
CUX1-206ENST00000437600 TMEM57Q8N5G2 664 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 SPRYD3Q8NCJ5 442 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 LTV1Q96GA3 475 aaPredicted RBP12.08□□□□□ -0.48
CUX1-206ENST00000437600 C1orf115Q9H7X2 142 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 MST1RQ04912 1400 aa12.08□□□□□ -0.48
CUX1-206ENST00000437600 ANKARQ7Z5J8 1434 aa12.07□□□□□ -0.48
CUX1-206ENST00000437600 MVPQ14764 893 aaKnown RBP12.07□□□□□ -0.48
CUX1-206ENST00000437600 PIK3C2AO00443 1686 aa12.06□□□□□ -0.48
CUX1-206ENST00000437600 MAP3K19Q56UN5 1328 aa12.06□□□□□ -0.48
CUX1-206ENST00000437600 CADPS2Q86UW7 1296 aa12.06□□□□□ -0.48
CUX1-206ENST00000437600 KRT24Q2M2I5 525 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 AMPHP49418 695 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 CABLES1Q8TDN4 633 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 SSH2Q76I76 1423 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 ATF7IPQ6VMQ6 1270 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 KRT28Q7Z3Y7 464 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 SLAIN2Q9P270 581 aa12.05□□□□□ -0.48
CUX1-206ENST00000437600 BRINP3Q76B58 766 aa12.04□□□□□ -0.48
CUX1-206ENST00000437600 NFE2L2Q16236 605 aa12.04□□□□□ -0.48
CUX1-206ENST00000437600 MIS18AQ9NYP9 233 aa12.04□□□□□ -0.48
CUX1-206ENST00000437600 AATKQ6ZMQ8 1374 aa12.03□□□□□ -0.48
CUX1-206ENST00000437600 SLKQ9H2G2 1235 aaPredicted RBP12.03□□□□□ -0.48
CUX1-206ENST00000437600 RWDD1Q9H446 243 aaPredicted RBP12.03□□□□□ -0.48
CUX1-206ENST00000437600 USP19O94966 1318 aa12.03□□□□□ -0.48
CUX1-206ENST00000437600 RTN4Q9NQC3 1192 aaKnown RBP12.03□□□□□ -0.48
CUX1-206ENST00000437600 OVOS2A0A0J9YW53 1432 aa12.03□□□□□ -0.48
CUX1-206ENST00000437600 OVOS2Q6IE36 1432 aa12.03□□□□□ -0.48
CUX1-206ENST00000437600 MCM10Q7L590 875 aa12.03□□□□□ -0.48
CUX1-206ENST00000437600 C8orf58Q8NAV2 365 aa12.02□□□□□ -0.49
CUX1-206ENST00000437600 PNNQ9H307 717 aaKnown RBP12.02□□□□□ -0.49
CUX1-206ENST00000437600 PIP4K2BP78356 416 aa12.02□□□□□ -0.49
CUX1-206ENST00000437600 CDK12Q9NYV4 1490 aaPredicted RBP12.02□□□□□ -0.49
CUX1-206ENST00000437600 MARF1Q9Y4F3 1742 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms