RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 NUTM1Q86Y26 1132 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 GOLIM4O00461 696 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 PAK3O75914 559 aaPredicted RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 PDE4CQ08493 712 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 CROCCP2Q86T23 111 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 ARFGAP2Q8N6H7 521 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 WDR66Q8TBY9 1149 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 CCDC43Q96MW1 224 aaKnown RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 DHX37Q8IY37 1157 aaKnown RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 K7ELQ4 463 aaPredicted RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 VGFO15240 615 aaPredicted RBP8.45□□□□□ -1.06
VPS53-204ENST00000437048 HSP90AB2PQ58FF8 381 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 MCTP1Q6DN14 999 aa8.45□□□□□ -1.06
VPS53-204ENST00000437048 KIF5CO60282 957 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 MCM4P33991 863 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 PTPN14Q15678 1187 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 SH2B1Q9NRF2 756 aaPredicted RBP8.44□□□□□ -1.06
VPS53-204ENST00000437048 FAM114A2Q9NRY5 505 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 DDX46Q7L014 1031 aaKnown RBP8.44□□□□□ -1.06
VPS53-204ENST00000437048 SPATS2Q86XZ4 545 aaKnown RBP8.44□□□□□ -1.06
VPS53-204ENST00000437048 PLVAPQ9BX97 442 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS53-204ENST00000437048 MAP3K1Q13233 1512 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 TMCO5BA8MYB1 307 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 CEP131Q9UPN4 1083 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 NSRP1Q9H0G5 558 aaKnown RBP8.44□□□□□ -1.06
VPS53-204ENST00000437048 CCAR1Q8IX12 1150 aaKnown RBP8.44□□□□□ -1.06
VPS53-204ENST00000437048 CCDC38Q502W7 563 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 TRIM22Q8IYM9 498 aa8.44□□□□□ -1.06
VPS53-204ENST00000437048 NCBP3Q53F19 620 aaKnown RBP8.43□□□□□ -1.06
VPS53-204ENST00000437048 ABCC11Q96J66 1382 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 ANKRD30BQ9BXX2 1392 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CLGNO14967 610 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 PPP1R12BO60237 982 aaPredicted RBP8.43□□□□□ -1.06
VPS53-204ENST00000437048 G3BP1Q13283 466 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS53-204ENST00000437048 SEPT6Q14141 434 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 ANKS4BQ8N8V4 417 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CCDC150Q8NCX0 1101 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 SOX12O15370 315 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 MAP3K11Q16584 847 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CCDC175P0C221 793 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 L3MBTL2Q969R5 705 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 ARHGAP29Q52LW3 1261 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 PPFIA3O75145 1194 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CCDC183Q5T5S1 534 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CLASRPQ8N2M8 674 aaKnown RBP8.43□□□□□ -1.06
VPS53-204ENST00000437048 GABPB1Q06547 395 aaPredicted RBP8.43□□□□□ -1.06
VPS53-204ENST00000437048 TNMDQ9H2S6 317 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 CPSF2Q9P2I0 782 aaKnown RBP8.43□□□□□ -1.06
VPS53-204ENST00000437048 ZMYM3Q14202 1370 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 POTEJP0CG39 1038 aa8.43□□□□□ -1.06
VPS53-204ENST00000437048 NAP1L1P55209 391 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 IRX3P78415 501 aaPredicted RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 CKAP4Q07065 602 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 ZSCAN25Q6NSZ9 544 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 MIPOL1Q8TD10 442 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 SREK1Q8WXA9 508 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 WDR63Q8IWG1 891 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 ZBTB9Q96C00 473 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 HSPA4P34932 840 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 IFI16Q16666 785 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 ANO10Q9NW15 660 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 DDX19AQ9NUU7 478 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 CTNNA3Q9UI47 895 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 CEP83Q9Y592 693 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 SARNPP82979 210 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 C9orf78Q9NZ63 289 aaPredicted RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 LIG1P18858 919 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 CCT4P50991 539 aaKnown RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 SMAP1Q8IYB5 467 aaPredicted RBP8.42□□□□□ -1.06
VPS53-204ENST00000437048 ANO2Q9NQ90 1003 aa8.42□□□□□ -1.06
VPS53-204ENST00000437048 VPS37CA5D8V6 355 aaPredicted RBP8.41□□□□□ -1.06
VPS53-204ENST00000437048 TAF4BQ92750 862 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 KANK3Q6NY19 840 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 PRPHP41219 470 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 EIF3DO15371 548 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS53-204ENST00000437048 EPB41L2O43491 1005 aaKnown RBP8.41□□□□□ -1.06
VPS53-204ENST00000437048 CTCFLQ8NI51 663 aaPredicted RBP8.41□□□□□ -1.06
VPS53-204ENST00000437048 EIF4G1Q04637 1599 aaKnown RBP8.41□□□□□ -1.06
VPS53-204ENST00000437048 CLUL1Q15846 466 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 EHBP1L1Q8N3D4 1523 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 PAXIP1Q6ZW49 1069 aaPredicted RBP8.41□□□□□ -1.06
VPS53-204ENST00000437048 CYP46A1Q9Y6A2 500 aa8.41□□□□□ -1.06
VPS53-204ENST00000437048 NUP62CLQ9H1M0 184 aa8.4□□□□□ -1.06
VPS53-204ENST00000437048 BMP2KQ9NSY1 1161 aaPredicted RBP8.4□□□□□ -1.06
VPS53-204ENST00000437048 PRM3Q9NNZ6 103 aa8.4□□□□□ -1.06
VPS53-204ENST00000437048 NOL7Q9UMY1 257 aaKnown RBP8.4□□□□□ -1.06
VPS53-204ENST00000437048 PAFAH1B1P43034 410 aa8.4□□□□□ -1.06
VPS53-204ENST00000437048 ENOX2Q16206 610 aaKnown RBP8.4□□□□□ -1.06
VPS53-204ENST00000437048 B4GALNT4Q76KP1 1039 aa8.4□□□□□ -1.06
VPS53-204ENST00000437048 ARFGAP3Q9NP61 516 aa8.4□□□□□ -1.06
VPS53-204ENST00000437048 NDC80O14777 642 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 CCDC172P0C7W6 258 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 CCDC141Q6ZP82 1450 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 KLHL40Q2TBA0 621 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 CNPY4Q8N129 248 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 CCDC110Q8TBZ0 833 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 RILPL2Q969X0 211 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 CCDC196A0A1B0GTZ2 297 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 USO1O60763 962 aaKnown RBP8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms