RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SBNO1A3KN83 1393 aa27.56■■■□□ 2
PTPRF-207ENST00000436724 USP54Q70EL1 1684 aa27.56■■■□□ 2
PTPRF-207ENST00000436724 AMPHP49418 695 aa27.56■■■□□ 2
PTPRF-207ENST00000436724 FLT4P35916 1363 aa27.55■■■□□ 2
PTPRF-207ENST00000436724 NEFMP07197 916 aa27.55■■■□□ 2
PTPRF-207ENST00000436724 B4GALNT3Q6L9W6 998 aa27.54■■■□□ 2
PTPRF-207ENST00000436724 MST1RQ04912 1400 aa27.54■■■□□ 2
PTPRF-207ENST00000436724 SULT6B1Q6IMI4 303 aa27.53■■■□□ 2
PTPRF-207ENST00000436724 PLEKHG5O94827 1062 aa27.52■■■□□ 2
PTPRF-207ENST00000436724 ZNF335Q9H4Z2 1342 aaPredicted RBP27.52■■■□□ 2
PTPRF-207ENST00000436724 MYT1Q01538 1121 aa27.51■■□□□ 1.99
PTPRF-207ENST00000436724 NCOA3Q9Y6Q9 1424 aa27.51■■□□□ 1.99
PTPRF-207ENST00000436724 NFE2L2Q16236 605 aa27.5■■□□□ 1.99
PTPRF-207ENST00000436724 DCCP43146 1447 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 LMOD2Q6P5Q4 547 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 KRT28Q7Z3Y7 464 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 EXOC6Q8TAG9 804 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 DDX17Q92841 729 aaKnown RBP27.49■■□□□ 1.99
PTPRF-207ENST00000436724 TSR2Q969E8 191 aaKnown RBP27.49■■□□□ 1.99
PTPRF-207ENST00000436724 XIRP1Q702N8 1843 aaKnown RBP27.49■■□□□ 1.99
PTPRF-207ENST00000436724 RGPD1P0DJD0 1748 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 BCAR3O75815 825 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 HOXC9P31274 260 aa27.49■■□□□ 1.99
PTPRF-207ENST00000436724 KIF1AQ12756 1690 aa27.48■■□□□ 1.99
PTPRF-207ENST00000436724 C20orf194Q5TEA3 1177 aa27.48■■□□□ 1.99
PTPRF-207ENST00000436724 MYH16Q9H6N6 1097 aa27.48■■□□□ 1.99
PTPRF-207ENST00000436724 CADPS2Q86UW7 1296 aa27.47■■□□□ 1.99
PTPRF-207ENST00000436724 MSH6P52701 1360 aa27.47■■□□□ 1.99
PTPRF-207ENST00000436724 RBM19Q9Y4C8 960 aaKnown RBP27.46■■□□□ 1.99
PTPRF-207ENST00000436724 TRPM3Q9HCF6 1732 aaPredicted RBP27.46■■□□□ 1.99
PTPRF-207ENST00000436724 FANCIQ9NVI1 1328 aa27.45■■□□□ 1.99
PTPRF-207ENST00000436724 THUMPD2Q9BTF0 503 aaKnown RBP27.45■■□□□ 1.99
PTPRF-207ENST00000436724 NFAT5O94916 1531 aa27.45■■□□□ 1.98
PTPRF-207ENST00000436724 LTN1O94822 1766 aa27.44■■□□□ 1.98
PTPRF-207ENST00000436724 EYA1Q99502 592 aa27.43■■□□□ 1.98
PTPRF-207ENST00000436724 DLG5Q8TDM6 1919 aa27.43■■□□□ 1.98
PTPRF-207ENST00000436724 LTV1Q96GA3 475 aaPredicted RBP27.42■■□□□ 1.98
PTPRF-207ENST00000436724 KIF24Q5T7B8 1368 aa27.42■■□□□ 1.98
PTPRF-207ENST00000436724 ZBTB7CA1YPR0 619 aa27.42■■□□□ 1.98
PTPRF-207ENST00000436724 ARHGEF10O15013 1369 aa27.41■■□□□ 1.98
PTPRF-207ENST00000436724 IL16Q14005 1332 aa27.41■■□□□ 1.98
PTPRF-207ENST00000436724 CRBNQ96SW2 442 aa27.41■■□□□ 1.98
PTPRF-207ENST00000436724 FAM83GA6ND36 823 aa27.4■■□□□ 1.98
PTPRF-207ENST00000436724 KCNH5Q8NCM2 988 aa27.4■■□□□ 1.98
PTPRF-207ENST00000436724 GCP02774 474 aa27.39■■□□□ 1.98
PTPRF-207ENST00000436724 IGSF1Q8N6C5 1336 aa27.39■■□□□ 1.98
PTPRF-207ENST00000436724 EXOSC9Q06265 439 aaKnown RBP27.38■■□□□ 1.97
PTPRF-207ENST00000436724 RARSP54136 660 aaKnown RBP27.38■■□□□ 1.97
PTPRF-207ENST00000436724 DCTN1Q14203 1278 aa27.38■■□□□ 1.97
PTPRF-207ENST00000436724 CCDC136Q96JN2 1154 aa27.38■■□□□ 1.97
PTPRF-207ENST00000436724 LAS1LQ9Y4W2 734 aaKnown RBP27.38■■□□□ 1.97
PTPRF-207ENST00000436724 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.37■■□□□ 1.97
PTPRF-207ENST00000436724 IP6K1Q92551 441 aa27.36■■□□□ 1.97
PTPRF-207ENST00000436724 BCL2L13Q9BXK5 485 aa27.36■■□□□ 1.97
PTPRF-207ENST00000436724 RTL1A6NKG5 1358 aa27.36■■□□□ 1.97
PTPRF-207ENST00000436724 KDRP35968 1356 aa27.36■■□□□ 1.97
PTPRF-207ENST00000436724 SLIT3O75094 1523 aa27.35■■□□□ 1.97
PTPRF-207ENST00000436724 ALS2Q96Q42 1657 aa27.34■■□□□ 1.97
PTPRF-207ENST00000436724 USP19O94966 1318 aa27.34■■□□□ 1.97
PTPRF-207ENST00000436724 NPHP3Q7Z494 1330 aa27.33■■□□□ 1.97
PTPRF-207ENST00000436724 LMOD3Q0VAK6 560 aa27.32■■□□□ 1.96
PTPRF-207ENST00000436724 BRINP3Q76B58 766 aa27.32■■□□□ 1.96
PTPRF-207ENST00000436724 ARHGEF25Q86VW2 580 aa27.32■■□□□ 1.96
PTPRF-207ENST00000436724 USHBP1Q8N6Y0 703 aa27.32■■□□□ 1.96
PTPRF-207ENST00000436724 MTHFSDQ2M296 383 aaKnown RBP27.31■■□□□ 1.96
PTPRF-207ENST00000436724 FRAT1Q92837 279 aaPredicted RBP27.31■■□□□ 1.96
PTPRF-207ENST00000436724 MED1Q15648 1581 aaPredicted RBP27.29■■□□□ 1.96
PTPRF-207ENST00000436724 MCM10Q7L590 875 aa27.29■■□□□ 1.96
PTPRF-207ENST00000436724 CALD1Q05682 793 aaKnown RBP27.28■■□□□ 1.96
PTPRF-207ENST00000436724 SLAIN2Q9P270 581 aa27.28■■□□□ 1.96
PTPRF-207ENST00000436724 PHRF1Q9P1Y6 1649 aaKnown RBP27.28■■□□□ 1.96
PTPRF-207ENST00000436724 PXDNQ92626 1479 aa27.28■■□□□ 1.96
PTPRF-207ENST00000436724 CANXP27824 592 aaKnown RBP27.28■■□□□ 1.96
PTPRF-207ENST00000436724 ZNF853P0CG23 659 aa27.27■■□□□ 1.96
PTPRF-207ENST00000436724 NBPF6Q5VWK0 638 aa27.27■■□□□ 1.96
PTPRF-207ENST00000436724 NBPF4Q96M43 638 aa27.27■■□□□ 1.96
PTPRF-207ENST00000436724 IFT57Q9NWB7 429 aa27.27■■□□□ 1.96
PTPRF-207ENST00000436724 ZC3H6P61129 1189 aaKnown RBP27.26■■□□□ 1.96
PTPRF-207ENST00000436724 GNAI1P63096 354 aa27.26■■□□□ 1.96
PTPRF-207ENST00000436724 CABLES1Q8TDN4 633 aa27.26■■□□□ 1.96
PTPRF-207ENST00000436724 MBIPQ9NS73 344 aa27.26■■□□□ 1.96
PTPRF-207ENST00000436724 CT47B1P0C2W7 299 aaPredicted RBP27.25■■□□□ 1.95
PTPRF-207ENST00000436724 LRRC59Q96AG4 307 aaKnown RBP27.25■■□□□ 1.95
PTPRF-207ENST00000436724 AXIN2Q9Y2T1 843 aa27.25■■□□□ 1.95
PTPRF-207ENST00000436724 CFAP44Q96MT7 982 aa27.25■■□□□ 1.95
PTPRF-207ENST00000436724 TNS3Q68CZ2 1445 aa27.24■■□□□ 1.95
PTPRF-207ENST00000436724 TNNQ9UQP3 1299 aa27.24■■□□□ 1.95
PTPRF-207ENST00000436724 RGPD2P0DJD1 1756 aa27.24■■□□□ 1.95
PTPRF-207ENST00000436724 PANK1Q8TE04 598 aa27.23■■□□□ 1.95
PTPRF-207ENST00000436724 SSH1Q8WYL5 1049 aa27.22■■□□□ 1.95
PTPRF-207ENST00000436724 SPATA31A3Q5VYP0 1347 aa27.22■■□□□ 1.95
PTPRF-207ENST00000436724 SMC4Q9NTJ3 1288 aa27.21■■□□□ 1.95
PTPRF-207ENST00000436724 TSPYL6Q8N831 410 aa27.21■■□□□ 1.95
PTPRF-207ENST00000436724 PDE3AQ14432 1141 aa27.2■■□□□ 1.94
PTPRF-207ENST00000436724 ELL2O00472 640 aaPredicted RBP27.19■■□□□ 1.94
PTPRF-207ENST00000436724 GAS2L2Q8NHY3 880 aa27.19■■□□□ 1.94
PTPRF-207ENST00000436724 ANKRD24Q8TF21 1146 aa27.19■■□□□ 1.94
PTPRF-207ENST00000436724 ANP32EQ9BTT0 268 aa27.19■■□□□ 1.94
PTPRF-207ENST00000436724 RGPD5Q99666 1765 aa27.18■■□□□ 1.94
PTPRF-207ENST00000436724 CLUAP1Q96AJ1 413 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms