RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 IL13P35225 146 aa23.71■■□□□ 1.39
CLK1-205ENST00000434813 ALDH1L2Q3SY69 923 aa23.71■■□□□ 1.39
CLK1-205ENST00000434813 DDX19BQ9UMR2 479 aa23.71■■□□□ 1.39
CLK1-205ENST00000434813 PDZRN3Q9UPQ7 1066 aa23.7■■□□□ 1.38
CLK1-205ENST00000434813 COG3Q96JB2 828 aa23.69■■□□□ 1.38
CLK1-205ENST00000434813 AMOTL2Q9Y2J4 779 aa23.69■■□□□ 1.38
CLK1-205ENST00000434813 ZNF428Q96B54 188 aa23.69■■□□□ 1.38
CLK1-205ENST00000434813 USP19O94966 1318 aa23.68■■□□□ 1.38
CLK1-205ENST00000434813 CALD1Q05682 793 aaKnown RBP23.68■■□□□ 1.38
CLK1-205ENST00000434813 NOB1Q9ULX3 412 aaKnown RBP23.68■■□□□ 1.38
CLK1-205ENST00000434813 PTPRUQ92729 1446 aa23.68■■□□□ 1.38
CLK1-205ENST00000434813 PRR36Q9H6K5 1346 aa23.68■■□□□ 1.38
CLK1-205ENST00000434813 SETD1BQ9UPS6 1966 aaKnown RBP23.68■■□□□ 1.38
CLK1-205ENST00000434813 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.67■■□□□ 1.38
CLK1-205ENST00000434813 HDAC1Q13547 482 aaPredicted RBP23.67■■□□□ 1.38
CLK1-205ENST00000434813 PHACTR3Q96KR7 559 aa23.67■■□□□ 1.38
CLK1-205ENST00000434813 ZNF692Q9BU19 519 aaPredicted RBP23.67■■□□□ 1.38
CLK1-205ENST00000434813 DAXXQ9UER7 740 aaPredicted RBP23.67■■□□□ 1.38
CLK1-205ENST00000434813 ZRANB1Q9UGI0 708 aa23.67■■□□□ 1.38
CLK1-205ENST00000434813 IPO8O15397 1037 aaKnown RBP23.66■■□□□ 1.38
CLK1-205ENST00000434813 HMOX1P09601 288 aa23.66■■□□□ 1.38
CLK1-205ENST00000434813 ANKLE2Q86XL3 938 aa23.66■■□□□ 1.38
CLK1-205ENST00000434813 ITPRIPQ8IWB1 547 aa23.66■■□□□ 1.38
CLK1-205ENST00000434813 NCKAP5LQ9HCH0 1330 aa23.66■■□□□ 1.38
CLK1-205ENST00000434813 BRPF1P55201 1214 aaPredicted RBP23.66■■□□□ 1.38
CLK1-205ENST00000434813 ZNF142P52746 1687 aaPredicted RBP23.65■■□□□ 1.38
CLK1-205ENST00000434813 PTCH1Q13635 1447 aa23.64■■□□□ 1.37
CLK1-205ENST00000434813 DLG5Q8TDM6 1919 aa23.63■■□□□ 1.37
CLK1-205ENST00000434813 TMEM57Q8N5G2 664 aa23.63■■□□□ 1.37
CLK1-205ENST00000434813 IFT57Q9NWB7 429 aa23.63■■□□□ 1.37
CLK1-205ENST00000434813 NALCNQ8IZF0 1738 aa23.62■■□□□ 1.37
CLK1-205ENST00000434813 SLC4A3P48751 1232 aa23.62■■□□□ 1.37
CLK1-205ENST00000434813 OVOS2A0A0J9YW53 1432 aa23.61■■□□□ 1.37
CLK1-205ENST00000434813 OVOS2Q6IE36 1432 aa23.61■■□□□ 1.37
CLK1-205ENST00000434813 SEC24BO95487 1268 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 GNAI1P63096 354 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 LMOD3Q0VAK6 560 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 ZBTB40Q9NUA8 1239 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 PIK3R4Q99570 1358 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 ZNF853P0CG23 659 aa23.6■■□□□ 1.37
CLK1-205ENST00000434813 RRS1Q15050 365 aaKnown RBP23.6■■□□□ 1.37
CLK1-205ENST00000434813 SMC5Q8IY18 1101 aa23.57■■□□□ 1.36
CLK1-205ENST00000434813 THUMPD2Q9BTF0 503 aaKnown RBP23.57■■□□□ 1.36
CLK1-205ENST00000434813 USP6P35125 1406 aa23.57■■□□□ 1.36
CLK1-205ENST00000434813 TTC21BQ7Z4L5 1316 aa23.57■■□□□ 1.36
CLK1-205ENST00000434813 PLEKHG3A1L390 1219 aa23.56■■□□□ 1.36
CLK1-205ENST00000434813 VAMP4O75379 141 aa23.56■■□□□ 1.36
CLK1-205ENST00000434813 ARHGAP45Q92619 1136 aa23.55■■□□□ 1.36
CLK1-205ENST00000434813 MRPL50Q8N5N7 158 aaKnown RBP23.55■■□□□ 1.36
CLK1-205ENST00000434813 MBIPQ9NS73 344 aa23.55■■□□□ 1.36
CLK1-205ENST00000434813 XRN1Q8IZH2 1706 aaKnown RBP23.54■■□□□ 1.36
CLK1-205ENST00000434813 KCNA6P17658 529 aa23.54■■□□□ 1.36
CLK1-205ENST00000434813 UPF2Q9HAU5 1272 aaKnown RBP23.54■■□□□ 1.36
CLK1-205ENST00000434813 RGPD1P0DJD0 1748 aa23.54■■□□□ 1.36
CLK1-205ENST00000434813 ACEP12821 1306 aa23.54■■□□□ 1.36
CLK1-205ENST00000434813 NUTM2FA1L443 756 aa23.54■■□□□ 1.36
CLK1-205ENST00000434813 CFAP44Q96MT7 982 aa23.54■■□□□ 1.36
CLK1-205ENST00000434813 PEAK1Q9H792 1746 aa23.53■■□□□ 1.36
CLK1-205ENST00000434813 TBC1D32Q96NH3 1257 aa23.52■■□□□ 1.36
CLK1-205ENST00000434813 SSH2Q76I76 1423 aa23.52■■□□□ 1.36
CLK1-205ENST00000434813 LMTK3Q96Q04 1460 aa23.52■■□□□ 1.36
CLK1-205ENST00000434813 USP31Q70CQ4 1352 aa23.52■■□□□ 1.36
CLK1-205ENST00000434813 TSPYL6Q8N831 410 aa23.52■■□□□ 1.36
CLK1-205ENST00000434813 HSPA2P54652 639 aa23.51■■□□□ 1.35
CLK1-205ENST00000434813 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
CLK1-205ENST00000434813 NFKBIBQ15653 356 aa23.5■■□□□ 1.35
CLK1-205ENST00000434813 CHMP4BQ9H444 224 aaKnown RBP23.5■■□□□ 1.35
CLK1-205ENST00000434813 EIF4A2Q14240 407 aaKnown RBP23.5■■□□□ 1.35
CLK1-205ENST00000434813 ABCC4O15439 1325 aa23.5■■□□□ 1.35
CLK1-205ENST00000434813 BECN1Q14457 450 aa23.49■■□□□ 1.35
CLK1-205ENST00000434813 TWISTNBQ3B726 338 aaPredicted RBP23.49■■□□□ 1.35
CLK1-205ENST00000434813 FMN2Q9NZ56 1722 aa23.47■■□□□ 1.35
CLK1-205ENST00000434813 NPHP4O75161 1426 aaPredicted RBP23.46■■□□□ 1.35
CLK1-205ENST00000434813 ZBTB7BO15156 539 aaPredicted RBP23.46■■□□□ 1.35
CLK1-205ENST00000434813 NUCB1Q02818 461 aa23.46■■□□□ 1.35
CLK1-205ENST00000434813 FAM83GA6ND36 823 aa23.45■■□□□ 1.35
CLK1-205ENST00000434813 TTC21AQ8NDW8 1320 aa23.45■■□□□ 1.35
CLK1-205ENST00000434813 AEBP1Q8IUX7 1158 aa23.45■■□□□ 1.34
CLK1-205ENST00000434813 SULT6B1Q6IMI4 303 aa23.44■■□□□ 1.34
CLK1-205ENST00000434813 C8orf58Q8NAV2 365 aa23.44■■□□□ 1.34
CLK1-205ENST00000434813 ELL2O00472 640 aaPredicted RBP23.42■■□□□ 1.34
CLK1-205ENST00000434813 API5Q9BZZ5 524 aaKnown RBP23.42■■□□□ 1.34
CLK1-205ENST00000434813 CHD2O14647 1828 aaKnown RBP23.42■■□□□ 1.34
CLK1-205ENST00000434813 ARHGEF10O15013 1369 aa23.42■■□□□ 1.34
CLK1-205ENST00000434813 KIF24Q5T7B8 1368 aa23.42■■□□□ 1.34
CLK1-205ENST00000434813 DCTN1Q14203 1278 aa23.42■■□□□ 1.34
CLK1-205ENST00000434813 NGDNQ8NEJ9 315 aaKnown RBP23.4■■□□□ 1.34
CLK1-205ENST00000434813 GCC1Q96CN9 775 aa23.4■■□□□ 1.34
CLK1-205ENST00000434813 ANKARQ7Z5J8 1434 aa23.4■■□□□ 1.34
CLK1-205ENST00000434813 CHD1LQ86WJ1 897 aa23.4■■□□□ 1.34
CLK1-205ENST00000434813 HAP1P54257 671 aaPredicted RBP23.39■■□□□ 1.34
CLK1-205ENST00000434813 HSP90AB2PQ58FF8 381 aa23.39■■□□□ 1.34
CLK1-205ENST00000434813 PIK3C2AO00443 1686 aa23.39■■□□□ 1.33
CLK1-205ENST00000434813 KIAA0232Q92628 1395 aa23.38■■□□□ 1.33
CLK1-205ENST00000434813 RGPD8O14715 1765 aaPredicted RBP23.38■■□□□ 1.33
CLK1-205ENST00000434813 SBNO1A3KN83 1393 aa23.38■■□□□ 1.33
CLK1-205ENST00000434813 FLT4P35916 1363 aa23.37■■□□□ 1.33
CLK1-205ENST00000434813 CHL1O00533 1208 aa23.37■■□□□ 1.33
CLK1-205ENST00000434813 LNPKQ9C0E8 428 aa23.37■■□□□ 1.33
CLK1-205ENST00000434813 MAP3K19Q56UN5 1328 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms