RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 KNDC1Q76NI1 1749 aa9.12□□□□□ -0.95
COL28A1-202ENST00000430711 FAM83GA6ND36 823 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 RBM42Q9BTD8 480 aaKnown RBP9.11□□□□□ -0.95
COL28A1-202ENST00000430711 RWDD1Q9H446 243 aaPredicted RBP9.11□□□□□ -0.95
COL28A1-202ENST00000430711 PRKAR2BP31323 418 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 DCTN1Q14203 1278 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 KRT24Q2M2I5 525 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 SIRT2Q8IXJ6 389 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 NGEFQ8N5V2 710 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 CDK19Q9BWU1 502 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 C22orf23Q9BZE7 217 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 MAP2P11137 1827 aaKnown RBP9.11□□□□□ -0.95
COL28A1-202ENST00000430711 KIF20BQ96Q89 1820 aa9.11□□□□□ -0.95
COL28A1-202ENST00000430711 YTHDC2Q9H6S0 1430 aaKnown RBP9.11□□□□□ -0.95
COL28A1-202ENST00000430711 PPIP5K1Q6PFW1 1433 aa9.1□□□□□ -0.95
COL28A1-202ENST00000430711 CLTCQ00610 1675 aaKnown RBP9.1□□□□□ -0.95
COL28A1-202ENST00000430711 VGFO15240 615 aaPredicted RBP9.1□□□□□ -0.95
COL28A1-202ENST00000430711 SMC5Q8IY18 1101 aa9.1□□□□□ -0.95
COL28A1-202ENST00000430711 KIF2CQ99661 725 aa9.1□□□□□ -0.95
COL28A1-202ENST00000430711 RSPH6AQ9H0K4 717 aa9.1□□□□□ -0.95
COL28A1-202ENST00000430711 POLKQ9UBT6 870 aa9.1□□□□□ -0.95
COL28A1-202ENST00000430711 DLG5Q8TDM6 1919 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 NME9Q86XW9 330 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 RPGRIP1LQ68CZ1 1315 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 CFAP74Q9C0B2 1584 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 ALKQ9UM73 1620 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 AK9Q5TCS8 1911 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 NSD2O96028 1365 aa9.09□□□□□ -0.95
COL28A1-202ENST00000430711 HDAC1Q13547 482 aaPredicted RBP9.09□□□□□ -0.95
COL28A1-202ENST00000430711 FAM135BQ49AJ0 1406 aa9.08□□□□□ -0.96
COL28A1-202ENST00000430711 PNPLA6Q8IY17 1366 aa9.08□□□□□ -0.96
COL28A1-202ENST00000430711 DIAPH1O60610 1272 aaKnown RBP9.08□□□□□ -0.96
COL28A1-202ENST00000430711 XRCC6P12956 609 aaKnown RBP eCLIP9.08□□□□□ -0.96
COL28A1-202ENST00000430711 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
COL28A1-202ENST00000430711 BECN1Q14457 450 aa9.08□□□□□ -0.96
COL28A1-202ENST00000430711 RRS1Q15050 365 aaKnown RBP9.08□□□□□ -0.96
COL28A1-202ENST00000430711 CPS1P31327 1500 aa9.07□□□□□ -0.96
COL28A1-202ENST00000430711 ABCB7O75027 752 aa9.07□□□□□ -0.96
COL28A1-202ENST00000430711 MCM4P33991 863 aa9.07□□□□□ -0.96
COL28A1-202ENST00000430711 C8orf58Q8NAV2 365 aa9.07□□□□□ -0.96
COL28A1-202ENST00000430711 SETD1AO15047 1707 aaKnown RBP9.07□□□□□ -0.96
COL28A1-202ENST00000430711 DDIT3P35638 169 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 NUCB1Q02818 461 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 AEBP1Q8IUX7 1158 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 OTUD7AQ8TE49 926 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-202ENST00000430711 DDX19BQ9UMR2 479 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 ZBTB7BO15156 539 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-202ENST00000430711 VAMP4O75379 141 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 C16orf71Q8IYS4 520 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-202ENST00000430711 CHAMP1Q96JM3 812 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 MBIPQ9NS73 344 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 C3P01024 1663 aa9.06□□□□□ -0.96
COL28A1-202ENST00000430711 HAX1O00165 279 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 POLA2Q14181 598 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 MRPL50Q8N5N7 158 aaKnown RBP9.05□□□□□ -0.96
COL28A1-202ENST00000430711 RGS17Q9UGC6 210 aaPredicted RBP9.05□□□□□ -0.96
COL28A1-202ENST00000430711 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 MLECQ14165 292 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 ANKRD45Q5TZF3 282 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 CHD1LQ86WJ1 897 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 GAS2L3Q86XJ1 694 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 CDC42BPGQ6DT37 1551 aa9.05□□□□□ -0.96
COL28A1-202ENST00000430711 FSD2A1L4K1 749 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 GSPT1P15170 499 aaKnown RBP9.04□□□□□ -0.96
COL28A1-202ENST00000430711 ARHGAP31Q2M1Z3 1444 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 UPF2Q9HAU5 1272 aaKnown RBP9.04□□□□□ -0.96
COL28A1-202ENST00000430711 ZNF335Q9H4Z2 1342 aaPredicted RBP9.04□□□□□ -0.96
COL28A1-202ENST00000430711 NUTM2FA1L443 756 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 TERF2IPQ9NYB0 399 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 METP08581 1390 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 NRXN3Q9Y4C0 1643 aa9.04□□□□□ -0.96
COL28A1-202ENST00000430711 ERBB4Q15303 1308 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 ZFYVE9O95405 1425 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 IL13P35225 146 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 TBC1D9Q6ZT07 1266 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 ZMYM3Q14202 1370 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 TRAK2O60296 914 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 TOM1O60784 492 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 POTEGQ6S5H5 508 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 TXNDC2Q86VQ3 553 aa9.03□□□□□ -0.96
COL28A1-202ENST00000430711 TNPO1Q92973 898 aaKnown RBP9.03□□□□□ -0.96
COL28A1-202ENST00000430711 PUS7Q96PZ0 661 aaKnown RBP9.03□□□□□ -0.96
COL28A1-202ENST00000430711 APBB1O00213 710 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 EIF5BO60841 1220 aaKnown RBP9.02□□□□□ -0.97
COL28A1-202ENST00000430711 CEBPAP49715 358 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-202ENST00000430711 GAS2L2Q8NHY3 880 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 PTCH1Q13635 1447 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 IL16Q14005 1332 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 PRR36Q9H6K5 1346 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 SMARCA5O60264 1052 aaPredicted RBP9.02□□□□□ -0.97
COL28A1-202ENST00000430711 RBM25P49756 843 aaKnown RBP9.02□□□□□ -0.97
COL28A1-202ENST00000430711 PKP1Q13835 747 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 NFE2L2Q16236 605 aa9.02□□□□□ -0.97
COL28A1-202ENST00000430711 RGS12O14924 1447 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 A2ML1A8K2U0 1454 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 SOX12O15370 315 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 ZNF853P0CG23 659 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 SSFA2P28290 1259 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 MKRN4PQ13434 485 aaPredicted RBP9.01□□□□□ -0.97
COL28A1-202ENST00000430711 HDGFL2Q7Z4V5 671 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms