RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 PPIP5K1Q6PFW1 1433 aa15.41■□□□□ 0.06
CDH3-202ENST00000429102 MEIS3Q99687 375 aa15.41■□□□□ 0.06
CDH3-202ENST00000429102 GDPD2Q9HCC8 539 aa15.41■□□□□ 0.06
CDH3-202ENST00000429102 SPHKAPQ2M3C7 1700 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 MAP4K4O95819 1239 aaPredicted RBP15.4■□□□□ 0.06
CDH3-202ENST00000429102 CT47B1P0C2W7 299 aaPredicted RBP15.4■□□□□ 0.06
CDH3-202ENST00000429102 GCC1Q96CN9 775 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 ZCCHC11Q5TAX3 1644 aaKnown RBP15.4■□□□□ 0.06
CDH3-202ENST00000429102 ASXL2Q76L83 1435 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 CLCN1P35523 988 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 NUTM2GQ5VZR2 741 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 LTV1Q96GA3 475 aaPredicted RBP15.4■□□□□ 0.06
CDH3-202ENST00000429102 SLC4A2P04920 1241 aa15.4■□□□□ 0.06
CDH3-202ENST00000429102 MSNP26038 577 aaKnown RBP15.4■□□□□ 0.06
CDH3-202ENST00000429102 MAP3K4Q9Y6R4 1608 aa15.39■□□□□ 0.05
CDH3-202ENST00000429102 CEP152O94986 1710 aa15.39■□□□□ 0.05
CDH3-202ENST00000429102 PLEKHM2Q8IWE5 1019 aa15.39■□□□□ 0.05
CDH3-202ENST00000429102 COG3Q96JB2 828 aa15.39■□□□□ 0.05
CDH3-202ENST00000429102 FOXO3O43524 673 aa15.38■□□□□ 0.05
CDH3-202ENST00000429102 NEK4P51957 841 aa15.38■□□□□ 0.05
CDH3-202ENST00000429102 SDSP20132 328 aa15.38■□□□□ 0.05
CDH3-202ENST00000429102 ALDH1L2Q3SY69 923 aa15.38■□□□□ 0.05
CDH3-202ENST00000429102 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.37■□□□□ 0.05
CDH3-202ENST00000429102 UPF3BQ9BZI7 483 aaKnown RBP15.37■□□□□ 0.05
CDH3-202ENST00000429102 R3HCC1Q9Y3T6 440 aaKnown RBP15.37■□□□□ 0.05
CDH3-202ENST00000429102 IQSEC2Q5JU85 1478 aa15.37■□□□□ 0.05
CDH3-202ENST00000429102 C14orf37Q86TY3 774 aa15.37■□□□□ 0.05
CDH3-202ENST00000429102 FAM13BQ9NYF5 915 aa15.37■□□□□ 0.05
CDH3-202ENST00000429102 XPCQ01831 940 aaPredicted RBP15.36■□□□□ 0.05
CDH3-202ENST00000429102 KIAA1211Q6ZU35 1233 aa15.36■□□□□ 0.05
CDH3-202ENST00000429102 SYCE3A1L190 88 aa15.36■□□□□ 0.05
CDH3-202ENST00000429102 SNX21Q969T3 373 aa15.36■□□□□ 0.05
CDH3-202ENST00000429102 API5Q9BZZ5 524 aaKnown RBP15.36■□□□□ 0.05
CDH3-202ENST00000429102 ANO2Q9NQ90 1003 aa15.36■□□□□ 0.05
CDH3-202ENST00000429102 ABCC11Q96J66 1382 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 SBNO2Q9Y2G9 1366 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 PTMAP06454 111 aaKnown RBP15.35■□□□□ 0.05
CDH3-202ENST00000429102 RPGRIP1LQ68CZ1 1315 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 CYB5RLQ6IPT4 315 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 G2E3Q7L622 706 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 PRIM1P49642 420 aaKnown RBP15.35■□□□□ 0.05
CDH3-202ENST00000429102 HSP90AB2PQ58FF8 381 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 CASC1Q6TDU7 716 aa15.35■□□□□ 0.05
CDH3-202ENST00000429102 DDX54Q8TDD1 881 aaKnown RBP15.34■□□□□ 0.05
CDH3-202ENST00000429102 IL1RAPL2Q9NP60 686 aa15.34■□□□□ 0.05
CDH3-202ENST00000429102 NSFL1CQ9UNZ2 370 aaKnown RBP15.34■□□□□ 0.05
CDH3-202ENST00000429102 SKOR2Q2VWA4 1001 aaPredicted RBP15.33■□□□□ 0.04
CDH3-202ENST00000429102 MYOM2P54296 1465 aa15.33■□□□□ 0.04
CDH3-202ENST00000429102 TTC22Q5TAA0 569 aa15.33■□□□□ 0.04
CDH3-202ENST00000429102 INTS3Q68E01 1043 aaKnown RBP15.33■□□□□ 0.04
CDH3-202ENST00000429102 ST18O60284 1047 aa15.32■□□□□ 0.04
CDH3-202ENST00000429102 CFAP44Q96MT7 982 aa15.32■□□□□ 0.04
CDH3-202ENST00000429102 RBSNQ9H1K0 784 aa15.32■□□□□ 0.04
CDH3-202ENST00000429102 DNTTIP2Q5QJE6 756 aaKnown RBP15.32■□□□□ 0.04
CDH3-202ENST00000429102 IL16Q14005 1332 aa15.32■□□□□ 0.04
CDH3-202ENST00000429102 ZSCAN23Q3MJ62 389 aa15.32■□□□□ 0.04
CDH3-202ENST00000429102 NUDT16Q96DE0 195 aaKnown RBP15.32■□□□□ 0.04
CDH3-202ENST00000429102 BCL11BQ9C0K0 894 aaPredicted RBP15.32■□□□□ 0.04
CDH3-202ENST00000429102 ESF1Q9H501 851 aaKnown RBP15.32■□□□□ 0.04
CDH3-202ENST00000429102 IL13P35225 146 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 IFT57Q9NWB7 429 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 TET3O43151 1660 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 USP26Q9BXU7 913 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 CHMP4BQ9H444 224 aaKnown RBP15.31■□□□□ 0.04
CDH3-202ENST00000429102 TULP4Q9NRJ4 1543 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 PKNOX2Q96KN3 472 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 TSPYL4Q9UJ04 414 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 CIZ1Q9ULV3 898 aaPredicted RBP15.31■□□□□ 0.04
CDH3-202ENST00000429102 CHMP3Q9Y3E7 222 aa15.31■□□□□ 0.04
CDH3-202ENST00000429102 FKBP5Q13451 457 aaPredicted RBP15.3■□□□□ 0.04
CDH3-202ENST00000429102 RABEP1Q15276 862 aa15.3■□□□□ 0.04
CDH3-202ENST00000429102 MROH2AA6NES4 1674 aa15.3■□□□□ 0.04
CDH3-202ENST00000429102 AK9Q5TCS8 1911 aa15.3■□□□□ 0.04
CDH3-202ENST00000429102 RTF1Q92541 710 aaKnown RBP15.3■□□□□ 0.04
CDH3-202ENST00000429102 SLC52A1Q9NWF4 448 aa15.3■□□□□ 0.04
CDH3-202ENST00000429102 NSD2O96028 1365 aa15.29■□□□□ 0.04
CDH3-202ENST00000429102 CEP85Q6P2H3 762 aa15.29■□□□□ 0.04
CDH3-202ENST00000429102 ZNF830Q96NB3 372 aaPredicted RBP15.29■□□□□ 0.04
CDH3-202ENST00000429102 DCTPP1Q9H773 170 aa15.29■□□□□ 0.04
CDH3-202ENST00000429102 SHPRHQ149N8 1683 aa15.29■□□□□ 0.04
CDH3-202ENST00000429102 EIF2S2P20042 333 aaKnown RBP15.29■□□□□ 0.04
CDH3-202ENST00000429102 DDIT3P35638 169 aa15.29■□□□□ 0.04
CDH3-202ENST00000429102 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.28■□□□□ 0.04
CDH3-202ENST00000429102 KIF1BO60333 1816 aa15.28■□□□□ 0.04
CDH3-202ENST00000429102 NUTM1Q86Y26 1132 aa15.28■□□□□ 0.04
CDH3-202ENST00000429102 ZMYND15Q9H091 742 aa15.28■□□□□ 0.04
CDH3-202ENST00000429102 PPRC1Q5VV67 1664 aaKnown RBP15.27■□□□□ 0.04
CDH3-202ENST00000429102 EFCAB6Q5THR3 1501 aa15.27■□□□□ 0.04
CDH3-202ENST00000429102 KLHL40Q2TBA0 621 aa15.27■□□□□ 0.04
CDH3-202ENST00000429102 QRICH2Q9H0J4 1663 aa15.27■□□□□ 0.03
CDH3-202ENST00000429102 NUCB2P80303 420 aa15.27■□□□□ 0.03
CDH3-202ENST00000429102 OSCARQ8IYS5 282 aa15.27■□□□□ 0.03
CDH3-202ENST00000429102 PALD1Q9ULE6 856 aa15.27■□□□□ 0.03
CDH3-202ENST00000429102 EIF4A2Q14240 407 aaKnown RBP15.26■□□□□ 0.03
CDH3-202ENST00000429102 GPT2Q8TD30 523 aa15.26■□□□□ 0.03
CDH3-202ENST00000429102 LMBRD1Q9NUN5 540 aa15.26■□□□□ 0.03
CDH3-202ENST00000429102 YTHDC2Q9H6S0 1430 aaKnown RBP15.26■□□□□ 0.03
CDH3-202ENST00000429102 LMOD3Q0VAK6 560 aa15.26■□□□□ 0.03
CDH3-202ENST00000429102 CCDC173Q0VFZ6 552 aa15.26■□□□□ 0.03
CDH3-202ENST00000429102 SLC26A8Q96RN1 970 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms