RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 GOLGB1Q14789 3259 aaKnown RBP12.72□□□□□ -0.37
HMGCLL1-206ENST00000428842 RGPD2P0DJD1 1756 aa12.72□□□□□ -0.37
HMGCLL1-206ENST00000428842 USP31Q70CQ4 1352 aa12.72□□□□□ -0.37
HMGCLL1-206ENST00000428842 PHACTR3Q96KR7 559 aa12.72□□□□□ -0.37
HMGCLL1-206ENST00000428842 COL3A1P02461 1466 aaPredicted RBP12.72□□□□□ -0.37
HMGCLL1-206ENST00000428842 APAF1O14727 1248 aa12.71□□□□□ -0.37
HMGCLL1-206ENST00000428842 DIAPH1O60610 1272 aaKnown RBP12.71□□□□□ -0.37
HMGCLL1-206ENST00000428842 NFAT5O94916 1531 aa12.71□□□□□ -0.38
HMGCLL1-206ENST00000428842 IL13P35225 146 aa12.71□□□□□ -0.38
HMGCLL1-206ENST00000428842 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.38
HMGCLL1-206ENST00000428842 PHLPP1O60346 1717 aa12.7□□□□□ -0.38
HMGCLL1-206ENST00000428842 FAM83GA6ND36 823 aa12.7□□□□□ -0.38
HMGCLL1-206ENST00000428842 SULT6B1Q6IMI4 303 aa12.7□□□□□ -0.38
HMGCLL1-206ENST00000428842 ARHGEF25Q86VW2 580 aa12.7□□□□□ -0.38
HMGCLL1-206ENST00000428842 STRN4Q9NRL3 753 aa12.7□□□□□ -0.38
HMGCLL1-206ENST00000428842 NBPF6Q5VWK0 638 aa12.69□□□□□ -0.38
HMGCLL1-206ENST00000428842 CDCA7LQ96GN5 454 aa12.69□□□□□ -0.38
HMGCLL1-206ENST00000428842 NBPF4Q96M43 638 aa12.69□□□□□ -0.38
HMGCLL1-206ENST00000428842 USP19O94966 1318 aa12.69□□□□□ -0.38
HMGCLL1-206ENST00000428842 EYA1Q99502 592 aa12.69□□□□□ -0.38
HMGCLL1-206ENST00000428842 PRKAR2BP31323 418 aa12.68□□□□□ -0.38
HMGCLL1-206ENST00000428842 CFAP53Q96M91 514 aa12.68□□□□□ -0.38
HMGCLL1-206ENST00000428842 THUMPD2Q9BTF0 503 aaKnown RBP12.68□□□□□ -0.38
HMGCLL1-206ENST00000428842 PRDM11Q9NQV5 511 aa12.68□□□□□ -0.38
HMGCLL1-206ENST00000428842 SBNO1A3KN83 1393 aa12.68□□□□□ -0.38
HMGCLL1-206ENST00000428842 AATKQ6ZMQ8 1374 aa12.67□□□□□ -0.38
HMGCLL1-206ENST00000428842 PNPLA6Q8IY17 1366 aa12.67□□□□□ -0.38
HMGCLL1-206ENST00000428842 PHRF1Q9P1Y6 1649 aaKnown RBP12.67□□□□□ -0.38
HMGCLL1-206ENST00000428842 COL16A1Q07092 1604 aaPredicted RBP12.66□□□□□ -0.38
HMGCLL1-206ENST00000428842 DCTN1Q14203 1278 aa12.66□□□□□ -0.38
HMGCLL1-206ENST00000428842 ANKRD24Q8TF21 1146 aa12.66□□□□□ -0.38
HMGCLL1-206ENST00000428842 SPINK5Q9NQ38 1064 aaPredicted RBP12.66□□□□□ -0.38
HMGCLL1-206ENST00000428842 FLT4P35916 1363 aa12.66□□□□□ -0.38
HMGCLL1-206ENST00000428842 CRYBG1Q9Y4K1 1723 aa12.65□□□□□ -0.38
HMGCLL1-206ENST00000428842 TCP11L2Q8N4U5 519 aa12.65□□□□□ -0.38
HMGCLL1-206ENST00000428842 KCNH5Q8NCM2 988 aa12.65□□□□□ -0.38
HMGCLL1-206ENST00000428842 IP6K1Q92551 441 aa12.65□□□□□ -0.38
HMGCLL1-206ENST00000428842 NLRP2Q9NX02 1062 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 BTG4Q9NY30 223 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 CDK12Q9NYV4 1490 aaPredicted RBP12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 SLIT3O75094 1523 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 CSB-PGBD3P0DP91 1061 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 LARP1Q6PKG0 1096 aaKnown RBP12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 RSPH6AQ9H0K4 717 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 ARHGEF10O15013 1369 aa12.64□□□□□ -0.39
HMGCLL1-206ENST00000428842 C8orf37Q96NL8 207 aa12.63□□□□□ -0.39
HMGCLL1-206ENST00000428842 PLEKHF1Q96S99 279 aa12.63□□□□□ -0.39
HMGCLL1-206ENST00000428842 CAMTA1Q9Y6Y1 1673 aa12.63□□□□□ -0.39
HMGCLL1-206ENST00000428842 ABCA3Q99758 1704 aa12.63□□□□□ -0.39
HMGCLL1-206ENST00000428842 SMG6Q86US8 1419 aaKnown RBP12.63□□□□□ -0.39
HMGCLL1-206ENST00000428842 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
HMGCLL1-206ENST00000428842 NUDCQ9Y266 331 aa12.61□□□□□ -0.39
HMGCLL1-206ENST00000428842 ERBB3P21860 1342 aa12.61□□□□□ -0.39
HMGCLL1-206ENST00000428842 INSRP06213 1382 aa12.6□□□□□ -0.39
HMGCLL1-206ENST00000428842 BLMP54132 1417 aaPredicted RBP12.6□□□□□ -0.39
HMGCLL1-206ENST00000428842 MCM10Q7L590 875 aa12.6□□□□□ -0.39
HMGCLL1-206ENST00000428842 COL18A1P39060 1754 aa12.6□□□□□ -0.39
HMGCLL1-206ENST00000428842 USP54Q70EL1 1684 aa12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 LRP6O75581 1613 aa12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 KAT6BQ8WYB5 2073 aa12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 TOM1L2Q6ZVM7 507 aa12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 RUNDC1Q96C34 613 aa12.59□□□□□ -0.39
HMGCLL1-206ENST00000428842 RIPK4P57078 832 aa12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 EVA1CP58658 441 aa12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 MIS18AQ9NYP9 233 aa12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 IGSF1Q8N6C5 1336 aa12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 TMPOP42166 694 aaKnown RBP12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 LAS1LQ9Y4W2 734 aaKnown RBP12.58□□□□□ -0.4
HMGCLL1-206ENST00000428842 TSR2Q969E8 191 aaKnown RBP12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 TRIM35Q9UPQ4 493 aa12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 RGPD1P0DJD0 1748 aa12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 MAPK8IP3Q9UPT6 1336 aa12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 NGLY1Q96IV0 654 aa12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 CCDC9Q9Y3X0 531 aaKnown RBP12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 UTRNP46939 3433 aa12.57□□□□□ -0.4
HMGCLL1-206ENST00000428842 IRX6P78412 446 aaPredicted RBP12.56□□□□□ -0.4
HMGCLL1-206ENST00000428842 FAM182BQ5T319 152 aa12.56□□□□□ -0.4
HMGCLL1-206ENST00000428842 FCHSD2O94868 740 aa12.56□□□□□ -0.4
HMGCLL1-206ENST00000428842 WWC1Q8IX03 1113 aa12.56□□□□□ -0.4
HMGCLL1-206ENST00000428842 DLG5Q8TDM6 1919 aa12.55□□□□□ -0.4
HMGCLL1-206ENST00000428842 COL5A2P05997 1499 aaPredicted RBP12.55□□□□□ -0.4
HMGCLL1-206ENST00000428842 ZBED9Q6R2W3 1325 aa12.55□□□□□ -0.4
HMGCLL1-206ENST00000428842 MEGF6O75095 1541 aa12.54□□□□□ -0.4
HMGCLL1-206ENST00000428842 LGR6Q9HBX8 967 aa12.54□□□□□ -0.4
HMGCLL1-206ENST00000428842 CPDO75976 1380 aa12.54□□□□□ -0.4
HMGCLL1-206ENST00000428842 IQSEC2Q5JU85 1478 aa12.53□□□□□ -0.4
HMGCLL1-206ENST00000428842 KRT24Q2M2I5 525 aa12.53□□□□□ -0.4
HMGCLL1-206ENST00000428842 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
HMGCLL1-206ENST00000428842 LMO7Q8WWI1 1683 aa12.53□□□□□ -0.4
HMGCLL1-206ENST00000428842 RTL1A6NKG5 1358 aa12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 JCADQ9P266 1359 aa12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 ELL2O00472 640 aaPredicted RBP12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 MEX3CQ5U5Q3 659 aaKnown RBP12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 DDX54Q8TDD1 881 aaKnown RBP12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 SUPT16HQ9Y5B9 1047 aaKnown RBP12.52□□□□□ -0.4
HMGCLL1-206ENST00000428842 TCERG1O14776 1098 aaKnown RBP12.52□□□□□ -0.41
HMGCLL1-206ENST00000428842 WDR17Q8IZU2 1322 aa12.52□□□□□ -0.41
HMGCLL1-206ENST00000428842 KDRP35968 1356 aa12.51□□□□□ -0.41
HMGCLL1-206ENST00000428842 NFE2L2Q16236 605 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms