RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 MED14O60244 1454 aa10.65□□□□□ -0.71
CD44-208ENST00000428726 AMPHP49418 695 aa10.64□□□□□ -0.71
CD44-208ENST00000428726 A2ML1A8K2U0 1454 aa10.64□□□□□ -0.71
CD44-208ENST00000428726 PDE3AQ14432 1141 aa10.64□□□□□ -0.71
CD44-208ENST00000428726 ANKRD45Q5TZF3 282 aa10.64□□□□□ -0.71
CD44-208ENST00000428726 DLC1Q96QB1 1528 aa10.64□□□□□ -0.71
CD44-208ENST00000428726 EIF4A2Q14240 407 aaKnown RBP10.63□□□□□ -0.71
CD44-208ENST00000428726 MVPQ14764 893 aaKnown RBP10.63□□□□□ -0.71
CD44-208ENST00000428726 ANKRD26Q9UPS8 1709 aa10.63□□□□□ -0.71
CD44-208ENST00000428726 ARHGEF40Q8TER5 1519 aa10.63□□□□□ -0.71
CD44-208ENST00000428726 TSHZ3Q63HK5 1081 aa10.63□□□□□ -0.71
CD44-208ENST00000428726 ATF7IPQ6VMQ6 1270 aa10.63□□□□□ -0.71
CD44-208ENST00000428726 C16orf71Q8IYS4 520 aaPredicted RBP10.63□□□□□ -0.71
CD44-208ENST00000428726 CD163L1Q9NR16 1453 aa10.62□□□□□ -0.71
CD44-208ENST00000428726 SETD1BQ9UPS6 1966 aaKnown RBP10.62□□□□□ -0.71
CD44-208ENST00000428726 FRAT2O75474 233 aaPredicted RBP10.62□□□□□ -0.71
CD44-208ENST00000428726 ANXA1P04083 346 aa10.62□□□□□ -0.71
CD44-208ENST00000428726 EID1Q9Y6B2 187 aa10.62□□□□□ -0.71
CD44-208ENST00000428726 SMARCA5O60264 1052 aaPredicted RBP10.62□□□□□ -0.71
CD44-208ENST00000428726 IL13P35225 146 aa10.62□□□□□ -0.71
CD44-208ENST00000428726 TWISTNBQ3B726 338 aaPredicted RBP10.62□□□□□ -0.71
CD44-208ENST00000428726 DTNBO60941 627 aa10.61□□□□□ -0.71
CD44-208ENST00000428726 ABTB2Q8N961 1025 aa10.61□□□□□ -0.71
CD44-208ENST00000428726 TNRQ92752 1358 aa10.61□□□□□ -0.71
CD44-208ENST00000428726 ADGRB2O60241 1585 aa10.61□□□□□ -0.71
CD44-208ENST00000428726 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-208ENST00000428726 NLRP1Q9C000 1473 aa10.6□□□□□ -0.71
CD44-208ENST00000428726 EIF5BO60841 1220 aaKnown RBP10.6□□□□□ -0.71
CD44-208ENST00000428726 NFE2L2Q16236 605 aa10.6□□□□□ -0.71
CD44-208ENST00000428726 TPRNQ4KMQ1 711 aa10.6□□□□□ -0.71
CD44-208ENST00000428726 ESCO1Q5FWF5 840 aa10.6□□□□□ -0.71
CD44-208ENST00000428726 SETD1AO15047 1707 aaKnown RBP10.6□□□□□ -0.71
CD44-208ENST00000428726 EIF2S2P20042 333 aaKnown RBP10.6□□□□□ -0.71
CD44-208ENST00000428726 TTC21BQ7Z4L5 1316 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 FCHSD2O94868 740 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 G2E3Q7L622 706 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 RWDD1Q9H446 243 aaPredicted RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 COL3A1P02461 1466 aaPredicted RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 VAMP4O75379 141 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 AAMPQ13685 434 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 OTUD7AQ8TE49 926 aaPredicted RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 LRRC59Q96AG4 307 aaKnown RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 GZF1Q9H116 711 aaPredicted RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 PNNQ9H307 717 aaKnown RBP10.59□□□□□ -0.71
CD44-208ENST00000428726 KIF20BQ96Q89 1820 aa10.59□□□□□ -0.71
CD44-208ENST00000428726 ATP7BP35670 1465 aa10.58□□□□□ -0.72
CD44-208ENST00000428726 HDGFP51858 240 aaKnown RBP10.58□□□□□ -0.72
CD44-208ENST00000428726 NFKBIBQ15653 356 aa10.58□□□□□ -0.72
CD44-208ENST00000428726 CPS1P31327 1500 aa10.58□□□□□ -0.72
CD44-208ENST00000428726 MAP3K19Q56UN5 1328 aa10.58□□□□□ -0.72
CD44-208ENST00000428726 KIF13AQ9H1H9 1805 aa10.58□□□□□ -0.72
CD44-208ENST00000428726 CT47B1P0C2W7 299 aaPredicted RBP10.58□□□□□ -0.72
CD44-208ENST00000428726 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
CD44-208ENST00000428726 PNPLA6Q8IY17 1366 aa10.57□□□□□ -0.72
CD44-208ENST00000428726 SLC4A2P04920 1241 aa10.57□□□□□ -0.72
CD44-208ENST00000428726 ORAI2Q96SN7 254 aa10.57□□□□□ -0.72
CD44-208ENST00000428726 RBM42Q9BTD8 480 aaKnown RBP10.57□□□□□ -0.72
CD44-208ENST00000428726 PIP4K2AP48426 406 aaPredicted RBP10.56□□□□□ -0.72
CD44-208ENST00000428726 NRXN3Q9Y4C0 1643 aa10.56□□□□□ -0.72
CD44-208ENST00000428726 ZC3H6P61129 1189 aaKnown RBP10.56□□□□□ -0.72
CD44-208ENST00000428726 CABLES1Q8TDN4 633 aa10.56□□□□□ -0.72
CD44-208ENST00000428726 SIRT1Q96EB6 747 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 EYA1Q99502 592 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 TMEM2Q9UHN6 1383 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 TSPYL4Q9UJ04 414 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 USP19O94966 1318 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 IL16Q14005 1332 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 HSPA2P54652 639 aa10.55□□□□□ -0.72
CD44-208ENST00000428726 NOL8Q76FK4 1167 aaKnown RBP10.55□□□□□ -0.72
CD44-208ENST00000428726 RTF1Q92541 710 aaKnown RBP10.54□□□□□ -0.72
CD44-208ENST00000428726 DDRGK1Q96HY6 314 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 MEIS3Q99687 375 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 FAM135BQ49AJ0 1406 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 SIRT2Q8IXJ6 389 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 DDX19BQ9UMR2 479 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 KNDC1Q76NI1 1749 aa10.54□□□□□ -0.72
CD44-208ENST00000428726 KCNQ3O43525 872 aa10.53□□□□□ -0.72
CD44-208ENST00000428726 PSME1Q06323 249 aa10.53□□□□□ -0.72
CD44-208ENST00000428726 CPSF1Q10570 1443 aaKnown RBP10.53□□□□□ -0.72
CD44-208ENST00000428726 CDC42BPGQ6DT37 1551 aa10.53□□□□□ -0.72
CD44-208ENST00000428726 EDC4Q6P2E9 1401 aaKnown RBP10.53□□□□□ -0.72
CD44-208ENST00000428726 MRPL50Q8N5N7 158 aaKnown RBP10.53□□□□□ -0.72
CD44-208ENST00000428726 ZBTB40Q9NUA8 1239 aa10.53□□□□□ -0.72
CD44-208ENST00000428726 TECPR2O15040 1411 aa10.53□□□□□ -0.72
CD44-208ENST00000428726 GNAI1P63096 354 aa10.52□□□□□ -0.72
CD44-208ENST00000428726 JARID2Q92833 1246 aaPredicted RBP10.52□□□□□ -0.72
CD44-208ENST00000428726 PTPRUQ92729 1446 aa10.52□□□□□ -0.73
CD44-208ENST00000428726 MAP4K4O95819 1239 aaPredicted RBP10.52□□□□□ -0.73
CD44-208ENST00000428726 FOXD4L5Q5VV16 416 aaPredicted RBP10.52□□□□□ -0.73
CD44-208ENST00000428726 MPRIPQ6WCQ1 1025 aa10.52□□□□□ -0.73
CD44-208ENST00000428726 FOXD4L4Q8WXT5 416 aaPredicted RBP10.52□□□□□ -0.73
CD44-208ENST00000428726 EXOC6BQ9Y2D4 811 aa10.52□□□□□ -0.73
CD44-208ENST00000428726 IPO8O15397 1037 aaKnown RBP10.52□□□□□ -0.73
CD44-208ENST00000428726 LGR6Q9HBX8 967 aa10.52□□□□□ -0.73
CD44-208ENST00000428726 PRAMEF22A3QJZ6 481 aa10.51□□□□□ -0.73
CD44-208ENST00000428726 ZBTB7BO15156 539 aaPredicted RBP10.51□□□□□ -0.73
CD44-208ENST00000428726 GSE1Q14687 1217 aa10.51□□□□□ -0.73
CD44-208ENST00000428726 UPF2Q9HAU5 1272 aaKnown RBP10.51□□□□□ -0.73
CD44-208ENST00000428726 FKBP5Q13451 457 aaPredicted RBP10.5□□□□□ -0.73
CD44-208ENST00000428726 THEMISQ8N1K5 641 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms