RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ALKQ9UM73 1620 aa12.13□□□□□ -0.47
SNHG3-201ENST00000413987 NRXN3Q9Y4C0 1643 aa12.13□□□□□ -0.47
SNHG3-201ENST00000413987 METP08581 1390 aa12.12□□□□□ -0.47
SNHG3-201ENST00000413987 POM121Q96HA1 1249 aa12.11□□□□□ -0.47
SNHG3-201ENST00000413987 DDRGK1Q96HY6 314 aa12.11□□□□□ -0.47
SNHG3-201ENST00000413987 SETBP1Q9Y6X0 1596 aa12.11□□□□□ -0.47
SNHG3-201ENST00000413987 WWC1Q8IX03 1113 aa12.1□□□□□ -0.47
SNHG3-201ENST00000413987 MRRFQ96E11 262 aaKnown RBP12.1□□□□□ -0.47
SNHG3-201ENST00000413987 THEMISQ8N1K5 641 aaPredicted RBP12.1□□□□□ -0.47
SNHG3-201ENST00000413987 KDM5AP29375 1690 aaKnown RBP12.1□□□□□ -0.47
SNHG3-201ENST00000413987 SETD1AO15047 1707 aaKnown RBP12.09□□□□□ -0.47
SNHG3-201ENST00000413987 TSR1Q2NL82 804 aaKnown RBP12.09□□□□□ -0.47
SNHG3-201ENST00000413987 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.09□□□□□ -0.47
SNHG3-201ENST00000413987 SMYD5Q6GMV2 418 aa12.09□□□□□ -0.47
SNHG3-201ENST00000413987 IVNS1ABPQ9Y6Y0 642 aa12.09□□□□□ -0.47
SNHG3-201ENST00000413987 YTHDC2Q9H6S0 1430 aaKnown RBP12.08□□□□□ -0.47
SNHG3-201ENST00000413987 POLR1AO95602 1720 aaPredicted RBP12.08□□□□□ -0.48
SNHG3-201ENST00000413987 WAPLQ7Z5K2 1190 aa12.08□□□□□ -0.48
SNHG3-201ENST00000413987 ARHGEF28Q8N1W1 1705 aaKnown RBP12.08□□□□□ -0.48
SNHG3-201ENST00000413987 EID1Q9Y6B2 187 aa12.08□□□□□ -0.48
SNHG3-201ENST00000413987 SLIT1O75093 1534 aa12.08□□□□□ -0.48
SNHG3-201ENST00000413987 ARHGAP23Q9P227 1491 aa12.08□□□□□ -0.48
SNHG3-201ENST00000413987 CENPJQ9HC77 1338 aaPredicted RBP12.08□□□□□ -0.48
SNHG3-201ENST00000413987 ADAMTS13Q76LX8 1427 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 NEFMP07197 916 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 HSPA2P54652 639 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 PRAM1Q96QH2 718 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 EIF3AQ14152 1382 aaKnown RBP12.07□□□□□ -0.48
SNHG3-201ENST00000413987 PLEKHH1Q9ULM0 1364 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 OS9Q13438 667 aaPredicted RBP12.07□□□□□ -0.48
SNHG3-201ENST00000413987 ZNF662Q6ZS27 426 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 QRICH2Q9H0J4 1663 aa12.07□□□□□ -0.48
SNHG3-201ENST00000413987 RIOK3O14730 519 aaKnown RBP12.06□□□□□ -0.48
SNHG3-201ENST00000413987 FOXD4L6Q3SYB3 417 aaPredicted RBP12.06□□□□□ -0.48
SNHG3-201ENST00000413987 FOXD4L3Q6VB84 417 aaPredicted RBP12.06□□□□□ -0.48
SNHG3-201ENST00000413987 ZNF142P52746 1687 aaPredicted RBP12.06□□□□□ -0.48
SNHG3-201ENST00000413987 TMF1P82094 1093 aa12.06□□□□□ -0.48
SNHG3-201ENST00000413987 MINK1Q8N4C8 1332 aaPredicted RBP12.05□□□□□ -0.48
SNHG3-201ENST00000413987 PLEKHG1Q9ULL1 1385 aa12.05□□□□□ -0.48
SNHG3-201ENST00000413987 TERF2IPQ9NYB0 399 aa12.05□□□□□ -0.48
SNHG3-201ENST00000413987 PPP1R1BQ9UD71 204 aaPredicted RBP12.05□□□□□ -0.48
SNHG3-201ENST00000413987 SETD1BQ9UPS6 1966 aaKnown RBP12.05□□□□□ -0.48
SNHG3-201ENST00000413987 RAB11FIP3O75154 756 aa12.05□□□□□ -0.48
SNHG3-201ENST00000413987 PTMAP06454 111 aaKnown RBP12.05□□□□□ -0.48
SNHG3-201ENST00000413987 HDGFP51858 240 aaKnown RBP12.05□□□□□ -0.48
SNHG3-201ENST00000413987 NCKAP5LQ9HCH0 1330 aa12.04□□□□□ -0.48
SNHG3-201ENST00000413987 GIMAP6Q6P9H5 292 aa12.04□□□□□ -0.48
SNHG3-201ENST00000413987 APBB1IPQ7Z5R6 666 aaPredicted RBP12.04□□□□□ -0.48
SNHG3-201ENST00000413987 FAM9BQ8IZU0 186 aa12.04□□□□□ -0.48
SNHG3-201ENST00000413987 POGKQ9P215 609 aa12.04□□□□□ -0.48
SNHG3-201ENST00000413987 SMG6Q86US8 1419 aaKnown RBP12.04□□□□□ -0.48
SNHG3-201ENST00000413987 HOXD11P31277 338 aaPredicted RBP12.03□□□□□ -0.48
SNHG3-201ENST00000413987 UBXN4Q92575 508 aa12.03□□□□□ -0.48
SNHG3-201ENST00000413987 C8orf37Q96NL8 207 aa12.03□□□□□ -0.48
SNHG3-201ENST00000413987 PTPRUQ92729 1446 aa12.03□□□□□ -0.48
SNHG3-201ENST00000413987 RALBP1Q15311 655 aa12.03□□□□□ -0.48
SNHG3-201ENST00000413987 RBM33Q96EV2 1170 aaKnown RBP12.03□□□□□ -0.48
SNHG3-201ENST00000413987 RNF123Q5XPI4 1314 aa12.03□□□□□ -0.48
SNHG3-201ENST00000413987 TCF3P15923 654 aa12.02□□□□□ -0.48
SNHG3-201ENST00000413987 ANKLE2Q86XL3 938 aa12.02□□□□□ -0.48
SNHG3-201ENST00000413987 PRKRIP1Q9H875 184 aaPredicted RBP12.02□□□□□ -0.48
SNHG3-201ENST00000413987 MRS2Q9HD23 443 aa12.02□□□□□ -0.49
SNHG3-201ENST00000413987 CABP2Q9NPB3 220 aa12.02□□□□□ -0.49
SNHG3-201ENST00000413987 SPINK5Q9NQ38 1064 aaPredicted RBP12.02□□□□□ -0.49
SNHG3-201ENST00000413987 LRPPRCP42704 1394 aaKnown RBP12.01□□□□□ -0.49
SNHG3-201ENST00000413987 ROBO2Q9HCK4 1378 aa12.01□□□□□ -0.49
SNHG3-201ENST00000413987 TULP4Q9NRJ4 1543 aa12.01□□□□□ -0.49
SNHG3-201ENST00000413987 GOPCQ9HD26 462 aa12.01□□□□□ -0.49
SNHG3-201ENST00000413987 MED14O60244 1454 aa12□□□□□ -0.49
SNHG3-201ENST00000413987 SECISBP2LQ93073 1101 aaKnown RBP12□□□□□ -0.49
SNHG3-201ENST00000413987 PANK3Q9H999 370 aa12□□□□□ -0.49
SNHG3-201ENST00000413987 MCCD1P59942 119 aaPredicted RBP11.99□□□□□ -0.49
SNHG3-201ENST00000413987 MYOM1P52179 1685 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 FOSBP53539 338 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 E2F4Q16254 413 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 NME8Q8N427 588 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 TMC1Q8TDI8 760 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 NUDCQ9Y266 331 aa11.99□□□□□ -0.49
SNHG3-201ENST00000413987 NUTM2FA1L443 756 aa11.98□□□□□ -0.49
SNHG3-201ENST00000413987 ABCC11Q96J66 1382 aa11.98□□□□□ -0.49
SNHG3-201ENST00000413987 NAP1L2Q9ULW6 460 aaPredicted RBP11.98□□□□□ -0.49
SNHG3-201ENST00000413987 TCERG1O14776 1098 aaKnown RBP11.98□□□□□ -0.49
SNHG3-201ENST00000413987 KCNA6P17658 529 aa11.98□□□□□ -0.49
SNHG3-201ENST00000413987 SRPK2P78362 688 aaKnown RBP11.98□□□□□ -0.49
SNHG3-201ENST00000413987 CCDC184Q52MB2 194 aa11.98□□□□□ -0.49
SNHG3-201ENST00000413987 SLC12A5Q9H2X9 1139 aa11.98□□□□□ -0.49
SNHG3-201ENST00000413987 SBNO2Q9Y2G9 1366 aa11.97□□□□□ -0.49
SNHG3-201ENST00000413987 LMTK3Q96Q04 1460 aa11.97□□□□□ -0.49
SNHG3-201ENST00000413987 GPIHBP1Q8IV16 184 aa11.96□□□□□ -0.49
SNHG3-201ENST00000413987 MORC4Q8TE76 937 aa11.96□□□□□ -0.49
SNHG3-201ENST00000413987 TBX22Q9Y458 520 aa11.96□□□□□ -0.49
SNHG3-201ENST00000413987 NPHP4O75161 1426 aaPredicted RBP11.96□□□□□ -0.5
SNHG3-201ENST00000413987 EVC2Q86UK5 1308 aa11.95□□□□□ -0.5
SNHG3-201ENST00000413987 PEX14O75381 377 aa11.95□□□□□ -0.5
SNHG3-201ENST00000413987 SKIV2LQ15477 1246 aaKnown RBP11.95□□□□□ -0.5
SNHG3-201ENST00000413987 CC2D1BQ5T0F9 858 aaKnown RBP11.95□□□□□ -0.5
SNHG3-201ENST00000413987 CDK19Q9BWU1 502 aa11.95□□□□□ -0.5
SNHG3-201ENST00000413987 CPS1P31327 1500 aa11.95□□□□□ -0.5
SNHG3-201ENST00000413987 RBM26Q5T8P6 1007 aaKnown RBP11.95□□□□□ -0.5
SNHG3-201ENST00000413987 DLC1Q96QB1 1528 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms