RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-204	ENST00000412568	CABP4	P57796	275 aa		13.7	□□□□□ -0.22
PTPRF-204	ENST00000412568	REC8	O95072	547 aa		13.7	□□□□□ -0.22
PTPRF-204	ENST00000412568	ASXL1	Q8IXJ9	1541 aa		13.7	□□□□□ -0.22
PTPRF-204	ENST00000412568	SMARCA5	O60264	1052 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	NPAT	Q14207	1427 aa		13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	PPIP5K1	Q6PFW1	1433 aa		13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	MSN	P26038	577 aa	Known RBP	13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	CABLES1	Q8TDN4	633 aa		13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	SRCIN1	Q9C0H9	1055 aa		13.69	□□□□□ -0.22
PTPRF-204	ENST00000412568	CT47B1	P0C2W7	299 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	KRT28	Q7Z3Y7	464 aa		13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	TTC37	Q6PGP7	1564 aa		13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	CHD1L	Q86WJ1	897 aa		13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	SAMD9L	Q8IVG5	1584 aa		13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	INTS3	Q68E01	1043 aa	Known RBP	13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	GNL2	Q13823	731 aa	Known RBP	13.68	□□□□□ -0.22
PTPRF-204	ENST00000412568	UGGT1	Q9NYU2	1555 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	CLASRP	Q8N2M8	674 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	IFT57	Q9NWB7	429 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	SRGAP3	O43295	1099 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	EIF4A2	Q14240	407 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	TSPYL6	Q8N831	410 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	KCNH5	Q8NCM2	988 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	CDC45	O75419	566 aa		13.67	□□□□□ -0.22
PTPRF-204	ENST00000412568	GCC2	Q8IWJ2	1684 aa		13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	LRPPRC	P42704	1394 aa	Known RBP	13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	RLBP1	P12271	317 aa		13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	PCDHB15	Q9Y5E8	787 aa		13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	LRRC59	Q96AG4	307 aa	Known RBP	13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	CHMP5	Q9NZZ3	219 aa		13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	C8orf58	Q8NAV2	365 aa		13.66	□□□□□ -0.22
PTPRF-204	ENST00000412568	LTK	P29376	864 aa		13.65	□□□□□ -0.22
PTPRF-204	ENST00000412568	GCC1	Q96CN9	775 aa		13.65	□□□□□ -0.22
PTPRF-204	ENST00000412568	TAF7	Q15545	349 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPRF-204	ENST00000412568	CHD1	O14646	1710 aa		13.65	□□□□□ -0.22
PTPRF-204	ENST00000412568	ADAMTS2	O95450	1211 aa		13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	APP	P05067	770 aa		13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	CCT4	P50991	539 aa	Known RBP	13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	DDX49	Q9Y6V7	483 aa	Known RBP	13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	MAST1	Q9Y2H9	1570 aa		13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	MEX3C	Q5U5Q3	659 aa	Known RBP	13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	SPG7	Q9UQ90	795 aa		13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	NINL	Q9Y2I6	1382 aa		13.64	□□□□□ -0.23
PTPRF-204	ENST00000412568	DNAJC2	Q99543	621 aa	Known RBP	13.63	□□□□□ -0.23
PTPRF-204	ENST00000412568	NSD2	O96028	1365 aa		13.63	□□□□□ -0.23
PTPRF-204	ENST00000412568	FOSB	P53539	338 aa		13.63	□□□□□ -0.23
PTPRF-204	ENST00000412568	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	NEK4	P51957	841 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	NUTM1	Q86Y26	1132 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	KAT6B	Q8WYB5	2073 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	ATP10A	O60312	1499 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	ZKSCAN1	P17029	563 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	HSP90AB4P	Q58FF6	505 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	RUFY2	Q8WXA3	655 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	JARID2	Q92833	1246 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	PLA2R1	Q13018	1463 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	LRRCC1	Q9C099	1032 aa		13.62	□□□□□ -0.23
PTPRF-204	ENST00000412568	DDX11L8	A8MPP1	907 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	TSHZ3	Q63HK5	1081 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	FSD1	Q9BTV5	496 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	ORAI2	Q96SN7	254 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	POLR3A	O14802	1390 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	ABCC11	Q96J66	1382 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	PIP4K2A	P48426	406 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	ANKRD24	Q8TF21	1146 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	MAP3K19	Q56UN5	1328 aa		13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	MTHFSD	Q2M296	383 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-204	ENST00000412568	ERC2	O15083	957 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	ALDH1L2	Q3SY69	923 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	FLII	Q13045	1269 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	SLC39A6	Q13433	755 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	WASHC4	Q2M389	1173 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	PTMS	P20962	102 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	DDX17	Q92841	729 aa	Known RBP	13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	EYA1	Q99502	592 aa		13.6	□□□□□ -0.23
PTPRF-204	ENST00000412568	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPRF-204	ENST00000412568	LRRFIP2	Q9Y608	721 aa	Known RBP	13.59	□□□□□ -0.23
PTPRF-204	ENST00000412568	MCTP1	Q6DN14	999 aa		13.58	□□□□□ -0.23
PTPRF-204	ENST00000412568	VSIG10	Q8N0Z9	540 aa		13.58	□□□□□ -0.23
PTPRF-204	ENST00000412568	ARHGEF5	Q12774	1597 aa		13.58	□□□□□ -0.24
PTPRF-204	ENST00000412568	VPS37C	A5D8V6	355 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPRF-204	ENST00000412568	KDM4A	O75164	1064 aa		13.58	□□□□□ -0.24
PTPRF-204	ENST00000412568	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPRF-204	ENST00000412568	MEIS3	Q99687	375 aa		13.58	□□□□□ -0.24
PTPRF-204	ENST00000412568	PI4KAP2	A4QPH2	592 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568		G3V3G9	751 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	DCAF8	Q5TAQ9	597 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	PI4KAP1	Q8N8J0	262 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	MYO5C	Q9NQX4	1742 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	DRC7	Q8IY82	874 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	PTPRT	O14522	1441 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	VPS37D	Q86XT2	251 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	FAM184A	Q8NB25	1140 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	ABCC1	P33527	1531 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	AACS	Q86V21	672 aa		13.57	□□□□□ -0.24
PTPRF-204	ENST00000412568	CNTROB	Q8N137	903 aa		13.57	□□□□□ -0.24

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