RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 CABP4P57796 275 aa13.7□□□□□ -0.22
PTPRF-204ENST00000412568 REC8O95072 547 aa13.7□□□□□ -0.22
PTPRF-204ENST00000412568 ASXL1Q8IXJ9 1541 aa13.7□□□□□ -0.22
PTPRF-204ENST00000412568 SMARCA5O60264 1052 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-204ENST00000412568 NPATQ14207 1427 aa13.69□□□□□ -0.22
PTPRF-204ENST00000412568 PPIP5K1Q6PFW1 1433 aa13.69□□□□□ -0.22
PTPRF-204ENST00000412568 MSNP26038 577 aaKnown RBP13.69□□□□□ -0.22
PTPRF-204ENST00000412568 CABLES1Q8TDN4 633 aa13.69□□□□□ -0.22
PTPRF-204ENST00000412568 CCDC85AQ96PX6 553 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-204ENST00000412568 SRCIN1Q9C0H9 1055 aa13.69□□□□□ -0.22
PTPRF-204ENST00000412568 CT47B1P0C2W7 299 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-204ENST00000412568 KRT28Q7Z3Y7 464 aa13.68□□□□□ -0.22
PTPRF-204ENST00000412568 TTC37Q6PGP7 1564 aa13.68□□□□□ -0.22
PTPRF-204ENST00000412568 CHD1LQ86WJ1 897 aa13.68□□□□□ -0.22
PTPRF-204ENST00000412568 SAMD9LQ8IVG5 1584 aa13.68□□□□□ -0.22
PTPRF-204ENST00000412568 INTS3Q68E01 1043 aaKnown RBP13.68□□□□□ -0.22
PTPRF-204ENST00000412568 GNL2Q13823 731 aaKnown RBP13.68□□□□□ -0.22
PTPRF-204ENST00000412568 UGGT1Q9NYU2 1555 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 CLASRPQ8N2M8 674 aaKnown RBP13.67□□□□□ -0.22
PTPRF-204ENST00000412568 IFT57Q9NWB7 429 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 SRGAP3O43295 1099 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 EIF4A2Q14240 407 aaKnown RBP13.67□□□□□ -0.22
PTPRF-204ENST00000412568 TSPYL6Q8N831 410 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 KCNH5Q8NCM2 988 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 CDC45O75419 566 aa13.67□□□□□ -0.22
PTPRF-204ENST00000412568 GCC2Q8IWJ2 1684 aa13.66□□□□□ -0.22
PTPRF-204ENST00000412568 LRPPRCP42704 1394 aaKnown RBP13.66□□□□□ -0.22
PTPRF-204ENST00000412568 RLBP1P12271 317 aa13.66□□□□□ -0.22
PTPRF-204ENST00000412568 PCDHB15Q9Y5E8 787 aa13.66□□□□□ -0.22
PTPRF-204ENST00000412568 COL17A1Q9UMD9 1497 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-204ENST00000412568 LRRC59Q96AG4 307 aaKnown RBP13.66□□□□□ -0.22
PTPRF-204ENST00000412568 CHMP5Q9NZZ3 219 aa13.66□□□□□ -0.22
PTPRF-204ENST00000412568 YTHDC2Q9H6S0 1430 aaKnown RBP13.66□□□□□ -0.22
PTPRF-204ENST00000412568 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
PTPRF-204ENST00000412568 LTKP29376 864 aa13.65□□□□□ -0.22
PTPRF-204ENST00000412568 GCC1Q96CN9 775 aa13.65□□□□□ -0.22
PTPRF-204ENST00000412568 TAF7Q15545 349 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-204ENST00000412568 CHD1O14646 1710 aa13.65□□□□□ -0.22
PTPRF-204ENST00000412568 ADAMTS2O95450 1211 aa13.64□□□□□ -0.23
PTPRF-204ENST00000412568 APPP05067 770 aa13.64□□□□□ -0.23
PTPRF-204ENST00000412568 CCT4P50991 539 aaKnown RBP13.64□□□□□ -0.23
PTPRF-204ENST00000412568 DDX49Q9Y6V7 483 aaKnown RBP13.64□□□□□ -0.23
PTPRF-204ENST00000412568 MAST1Q9Y2H9 1570 aa13.64□□□□□ -0.23
PTPRF-204ENST00000412568 MEX3CQ5U5Q3 659 aaKnown RBP13.64□□□□□ -0.23
PTPRF-204ENST00000412568 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
PTPRF-204ENST00000412568 NINLQ9Y2I6 1382 aa13.64□□□□□ -0.23
PTPRF-204ENST00000412568 DNAJC2Q99543 621 aaKnown RBP13.63□□□□□ -0.23
PTPRF-204ENST00000412568 NSD2O96028 1365 aa13.63□□□□□ -0.23
PTPRF-204ENST00000412568 FOSBP53539 338 aa13.63□□□□□ -0.23
PTPRF-204ENST00000412568 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-204ENST00000412568 NEK4P51957 841 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 NUTM1Q86Y26 1132 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 KAT6BQ8WYB5 2073 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 ATP10AO60312 1499 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 ZKSCAN1P17029 563 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-204ENST00000412568 HSP90AB4PQ58FF6 505 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 RUFY2Q8WXA3 655 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 JARID2Q92833 1246 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-204ENST00000412568 PLA2R1Q13018 1463 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 LRRCC1Q9C099 1032 aa13.62□□□□□ -0.23
PTPRF-204ENST00000412568 DDX11L8A8MPP1 907 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 TSHZ3Q63HK5 1081 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 FSD1Q9BTV5 496 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 ORAI2Q96SN7 254 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 POLR3AO14802 1390 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-204ENST00000412568 ABCC11Q96J66 1382 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 PIP4K2AP48426 406 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-204ENST00000412568 ANKRD24Q8TF21 1146 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
PTPRF-204ENST00000412568 MTHFSDQ2M296 383 aaKnown RBP13.61□□□□□ -0.23
PTPRF-204ENST00000412568 ERC2O15083 957 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 ALDH1L2Q3SY69 923 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 FLIIQ13045 1269 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 SLC39A6Q13433 755 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 WASHC4Q2M389 1173 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 AEBP2Q6ZN18 517 aaPredicted RBP13.6□□□□□ -0.23
PTPRF-204ENST00000412568 PTMSP20962 102 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 DDX17Q92841 729 aaKnown RBP13.6□□□□□ -0.23
PTPRF-204ENST00000412568 EYA1Q99502 592 aa13.6□□□□□ -0.23
PTPRF-204ENST00000412568 ANO8Q9HCE9 1232 aaPredicted RBP13.59□□□□□ -0.23
PTPRF-204ENST00000412568 LRRFIP2Q9Y608 721 aaKnown RBP13.59□□□□□ -0.23
PTPRF-204ENST00000412568 MCTP1Q6DN14 999 aa13.58□□□□□ -0.23
PTPRF-204ENST00000412568 VSIG10Q8N0Z9 540 aa13.58□□□□□ -0.23
PTPRF-204ENST00000412568 ARHGEF5Q12774 1597 aa13.58□□□□□ -0.24
PTPRF-204ENST00000412568 VPS37CA5D8V6 355 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-204ENST00000412568 KDM4AO75164 1064 aa13.58□□□□□ -0.24
PTPRF-204ENST00000412568 RPAP2Q8IXW5 612 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-204ENST00000412568 MEIS3Q99687 375 aa13.58□□□□□ -0.24
PTPRF-204ENST00000412568 PI4KAP2A4QPH2 592 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 G3V3G9 751 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 DCAF8Q5TAQ9 597 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 PI4KAP1Q8N8J0 262 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 MYO5CQ9NQX4 1742 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 DRC7Q8IY82 874 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 PTPRTO14522 1441 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 VPS37DQ86XT2 251 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 FAM184AQ8NB25 1140 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 ABCC1P33527 1531 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 AACSQ86V21 672 aa13.57□□□□□ -0.24
PTPRF-204ENST00000412568 CNTROBQ8N137 903 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms