RNA–Protein interactions for RNA: ENST00000398587.6

PCDHGA11-201, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA11, Length 4,647 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-201ENST00000398587 KIF6Q6ZMV9 814 aa17.16■□□□□ 0.34
PCDHGA11-201ENST00000398587 PHF8Q9UPP1 1060 aa17.16■□□□□ 0.34
PCDHGA11-201ENST00000398587 MARCH6O60337 910 aa17.15■□□□□ 0.34
PCDHGA11-201ENST00000398587 DCTN1Q14203 1278 aa17.15■□□□□ 0.34
PCDHGA11-201ENST00000398587 KIF21AQ7Z4S6 1674 aa17.15■□□□□ 0.34
PCDHGA11-201ENST00000398587 RBM42Q9BTD8 480 aaKnown RBP17.15■□□□□ 0.34
PCDHGA11-201ENST00000398587 CEBPAP49715 358 aaPredicted RBP17.15■□□□□ 0.34
PCDHGA11-201ENST00000398587 SRGAP3O43295 1099 aa17.14■□□□□ 0.34
PCDHGA11-201ENST00000398587 XPCQ01831 940 aaPredicted RBP17.14■□□□□ 0.34
PCDHGA11-201ENST00000398587 NFXL1Q6ZNB6 911 aa17.14■□□□□ 0.34
PCDHGA11-201ENST00000398587 ZC3H6P61129 1189 aaKnown RBP17.14■□□□□ 0.33
PCDHGA11-201ENST00000398587 TESK2Q96S53 571 aa17.14■□□□□ 0.33
PCDHGA11-201ENST00000398587 ERICH2A1L162 156 aa17.14■□□□□ 0.33
PCDHGA11-201ENST00000398587 CLSTN1O94985 981 aa17.14■□□□□ 0.33
PCDHGA11-201ENST00000398587 MSH5O43196 834 aa17.14■□□□□ 0.33
PCDHGA11-201ENST00000398587 ARHGEF12Q9NZN5 1544 aa17.13■□□□□ 0.33
PCDHGA11-201ENST00000398587 ABCC10Q5T3U5 1492 aa17.13■□□□□ 0.33
PCDHGA11-201ENST00000398587 PARD3Q8TEW0 1356 aa17.13■□□□□ 0.33
PCDHGA11-201ENST00000398587 DNAJC2Q99543 621 aaKnown RBP17.13■□□□□ 0.33
PCDHGA11-201ENST00000398587 TRAK2O60296 914 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 DDX54Q8TDD1 881 aaKnown RBP17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 ASXL1Q8IXJ9 1541 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 TAF7Q15545 349 aaPredicted RBP17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 PUS7Q96PZ0 661 aaKnown RBP17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 MIS18AQ9NYP9 233 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 PDCP20941 246 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 CREBRFQ8IUR6 639 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 TBC1D2BQ9UPU7 963 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 TTC21BQ7Z4L5 1316 aa17.12■□□□□ 0.33
PCDHGA11-201ENST00000398587 DNMT1P26358 1616 aaKnown RBP17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 IL16Q14005 1332 aa17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 MEX3CQ5U5Q3 659 aaKnown RBP17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 MBD3O95983 291 aa17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 MYL6BP14649 208 aa17.11■□□□□ 0.33
PCDHGA11-201ENST00000398587 PZPP20742 1482 aa17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 TNRQ92752 1358 aa17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 AMOTQ4VCS5 1084 aa17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 CCDC73Q6ZRK6 1079 aa17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 MRE11P49959 708 aa17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 SAFBQ15424 915 aaKnown RBP eCLIP17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 TPD52L1Q16890 204 aaPredicted RBP17.1■□□□□ 0.33
PCDHGA11-201ENST00000398587 K7ELQ4 463 aaPredicted RBP17.09■□□□□ 0.33
PCDHGA11-201ENST00000398587 TRIM27P14373 513 aa17.09■□□□□ 0.33
PCDHGA11-201ENST00000398587 FYB1O15117 783 aa17.09■□□□□ 0.33
PCDHGA11-201ENST00000398587 RBM33Q96EV2 1170 aaKnown RBP17.09■□□□□ 0.33
PCDHGA11-201ENST00000398587 SIL1Q9H173 461 aa17.08■□□□□ 0.33
PCDHGA11-201ENST00000398587 ADGRL2O95490 1459 aa17.08■□□□□ 0.33
PCDHGA11-201ENST00000398587 EIF2AK4Q9P2K8 1649 aaKnown RBP17.08■□□□□ 0.32
PCDHGA11-201ENST00000398587 ABCC2Q92887 1545 aa17.08■□□□□ 0.32
PCDHGA11-201ENST00000398587 FOXO3O43524 673 aa17.08■□□□□ 0.32
PCDHGA11-201ENST00000398587 CCDC158Q5M9N0 1113 aa17.08■□□□□ 0.32
PCDHGA11-201ENST00000398587 IL1RAPL2Q9NP60 686 aa17.08■□□□□ 0.32
PCDHGA11-201ENST00000398587 UHRF1BP1LA0JNW5 1464 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 TEX14Q8IWB6 1497 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 ACEP12821 1306 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 SASS6Q6UVJ0 657 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 HOOK1Q9UJC3 728 aaKnown RBP17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 EXOC6BQ9Y2D4 811 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 SAMD9Q5K651 1589 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 CYP46A1Q9Y6A2 500 aa17.07■□□□□ 0.32
PCDHGA11-201ENST00000398587 CIZ1Q9ULV3 898 aaPredicted RBP17.06■□□□□ 0.32
PCDHGA11-201ENST00000398587 TPM3P06753 285 aa17.06■□□□□ 0.32
PCDHGA11-201ENST00000398587 AACSQ86V21 672 aa17.06■□□□□ 0.32
PCDHGA11-201ENST00000398587 CNNM1Q9NRU3 951 aa17.06■□□□□ 0.32
PCDHGA11-201ENST00000398587 FAM177BA6PVY3 158 aa17.06■□□□□ 0.32
PCDHGA11-201ENST00000398587 VPS53Q5VIR6 699 aa17.05■□□□□ 0.32
PCDHGA11-201ENST00000398587 KIF1BPQ96EK5 621 aa17.05■□□□□ 0.32
PCDHGA11-201ENST00000398587 CCDC27Q2M243 656 aa17.05■□□□□ 0.32
PCDHGA11-201ENST00000398587 POLR3AO14802 1390 aaPredicted RBP17.05■□□□□ 0.32
PCDHGA11-201ENST00000398587 PES1O00541 588 aaKnown RBP17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 FOSBP53539 338 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 TPM1P09493 284 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 CCDC57Q2TAC2 916 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 PTPRCP08575 1304 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 SART3Q15020 963 aaKnown RBP17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 ANKRD1Q15327 319 aa17.04■□□□□ 0.32
PCDHGA11-201ENST00000398587 UHRF1BP1Q6BDS2 1440 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 TSR1Q2NL82 804 aaKnown RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 USHBP1Q8N6Y0 703 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 TRIM34Q9BYJ4 488 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 TTC39AQ5SRH9 613 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 LARP1Q6PKG0 1096 aaKnown RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 CEP126Q9P2H0 1117 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 RAB11FIP3O75154 756 aa17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 CAVIN1Q6NZI2 390 aaKnown RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 DHX16O60231 1041 aaKnown RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 PRPF40AO75400 957 aaKnown RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 NASPP49321 788 aaPredicted RBP17.03■□□□□ 0.32
PCDHGA11-201ENST00000398587 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.02■□□□□ 0.32
PCDHGA11-201ENST00000398587 PER1O15534 1290 aaPredicted RBP17.02■□□□□ 0.32
PCDHGA11-201ENST00000398587 SKAP1Q86WV1 359 aa17.02■□□□□ 0.32
PCDHGA11-201ENST00000398587 CCDC47Q96A33 483 aaKnown RBP17.02■□□□□ 0.32
PCDHGA11-201ENST00000398587 RSPH6AQ9H0K4 717 aa17.02■□□□□ 0.32
PCDHGA11-201ENST00000398587 MBIPQ9NS73 344 aa17.01■□□□□ 0.31
PCDHGA11-201ENST00000398587 MAP4K4O95819 1239 aaPredicted RBP17.01■□□□□ 0.31
PCDHGA11-201ENST00000398587 MX1P20591 662 aa17.01■□□□□ 0.31
PCDHGA11-201ENST00000398587 TTC21AQ8NDW8 1320 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms