RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 IL16Q14005 1332 aa19.72■□□□□ 0.75
PCDH1-203ENST00000394536 NSD2O96028 1365 aa19.71■□□□□ 0.75
PCDH1-203ENST00000394536 ZBTB7BO15156 539 aaPredicted RBP19.71■□□□□ 0.75
PCDH1-203ENST00000394536 MRPL50Q8N5N7 158 aaKnown RBP19.71■□□□□ 0.75
PCDH1-203ENST00000394536 UBE2Q2Q8WVN8 375 aa19.71■□□□□ 0.75
PCDH1-203ENST00000394536 SYAP1Q96A49 352 aaPredicted RBP19.71■□□□□ 0.75
PCDH1-203ENST00000394536 CHMP3Q9Y3E7 222 aa19.71■□□□□ 0.75
PCDH1-203ENST00000394536 CROCC2H7BZ55 1655 aa19.71■□□□□ 0.75
PCDH1-203ENST00000394536 GOLGA6L4A6NEF3 574 aa19.7■□□□□ 0.74
PCDH1-203ENST00000394536 ADCY10Q96PN6 1610 aa19.7■□□□□ 0.74
PCDH1-203ENST00000394536 BAG4O95429 457 aaKnown RBP19.7■□□□□ 0.74
PCDH1-203ENST00000394536 CCDC61Q9Y6R9 512 aa19.7■□□□□ 0.74
PCDH1-203ENST00000394536 MAP4K4O95819 1239 aaPredicted RBP19.7■□□□□ 0.74
PCDH1-203ENST00000394536 UPF3BQ9BZI7 483 aaKnown RBP19.7■□□□□ 0.74
PCDH1-203ENST00000394536 RBM10P98175 930 aaKnown RBP19.69■□□□□ 0.74
PCDH1-203ENST00000394536 AEBP1Q8IUX7 1158 aa19.69■□□□□ 0.74
PCDH1-203ENST00000394536 ERC2O15083 957 aa19.69■□□□□ 0.74
PCDH1-203ENST00000394536 NAP1L2Q9ULW6 460 aaPredicted RBP19.69■□□□□ 0.74
PCDH1-203ENST00000394536 FGD1P98174 961 aa19.69■□□□□ 0.74
PCDH1-203ENST00000394536 IL1RAPL2Q9NP60 686 aa19.69■□□□□ 0.74
PCDH1-203ENST00000394536 KIAA2012Q0VF49 1180 aa19.68■□□□□ 0.74
PCDH1-203ENST00000394536 OTUD7AQ8TE49 926 aaPredicted RBP19.68■□□□□ 0.74
PCDH1-203ENST00000394536 CCDC173Q0VFZ6 552 aa19.67■□□□□ 0.74
PCDH1-203ENST00000394536 MEIS3Q99687 375 aa19.67■□□□□ 0.74
PCDH1-203ENST00000394536 PREX2Q70Z35 1606 aa19.67■□□□□ 0.74
PCDH1-203ENST00000394536 RPAP2Q8IXW5 612 aaPredicted RBP19.67■□□□□ 0.74
PCDH1-203ENST00000394536 ISY1Q9ULR0 285 aaKnown RBP19.67■□□□□ 0.74
PCDH1-203ENST00000394536 ASXL2Q76L83 1435 aa19.66■□□□□ 0.74
PCDH1-203ENST00000394536 SNX21Q969T3 373 aa19.66■□□□□ 0.74
PCDH1-203ENST00000394536 RBM27Q9P2N5 1060 aaKnown RBP19.66■□□□□ 0.74
PCDH1-203ENST00000394536 SURF6O75683 361 aaKnown RBP19.66■□□□□ 0.74
PCDH1-203ENST00000394536 SYCE3A1L190 88 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 SDSP20132 328 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 SYNMO15061 1565 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 GNAI2P04899 355 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 RBM25P49756 843 aaKnown RBP19.65■□□□□ 0.74
PCDH1-203ENST00000394536 SLC26A8Q96RN1 970 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 PLEKHF1Q96S99 279 aa19.65■□□□□ 0.74
PCDH1-203ENST00000394536 ERCC6L2Q5T890 1561 aa19.64■□□□□ 0.73
PCDH1-203ENST00000394536 CD2BP2O95400 341 aaKnown RBP19.64■□□□□ 0.73
PCDH1-203ENST00000394536 RAB3GAP1Q15042 981 aa19.64■□□□□ 0.73
PCDH1-203ENST00000394536 CLCN1P35523 988 aa19.64■□□□□ 0.73
PCDH1-203ENST00000394536 NLRP6P59044 892 aa19.64■□□□□ 0.73
PCDH1-203ENST00000394536 DRC7Q8IY82 874 aa19.64■□□□□ 0.73
PCDH1-203ENST00000394536 TTC22Q5TAA0 569 aa19.63■□□□□ 0.73
PCDH1-203ENST00000394536 LARP6Q9BRS8 491 aaKnown RBP19.63■□□□□ 0.73
PCDH1-203ENST00000394536 GDPD2Q9HCC8 539 aa19.63■□□□□ 0.73
PCDH1-203ENST00000394536 WASLO00401 505 aaPredicted RBP19.63■□□□□ 0.73
PCDH1-203ENST00000394536 UBTFL1P0CB47 393 aaPredicted RBP19.63■□□□□ 0.73
PCDH1-203ENST00000394536 ZGPATQ8N5A5 531 aaKnown RBP19.63■□□□□ 0.73
PCDH1-203ENST00000394536 ATP7AQ04656 1500 aa19.63■□□□□ 0.73
PCDH1-203ENST00000394536 PLEKHM2Q8IWE5 1019 aa19.62■□□□□ 0.73
PCDH1-203ENST00000394536 CDC42BPBQ9Y5S2 1711 aa19.62■□□□□ 0.73
PCDH1-203ENST00000394536 ARHGAP45Q92619 1136 aa19.62■□□□□ 0.73
PCDH1-203ENST00000394536 KDM5AP29375 1690 aaKnown RBP19.62■□□□□ 0.73
PCDH1-203ENST00000394536 HSP90AB2PQ58FF8 381 aa19.62■□□□□ 0.73
PCDH1-203ENST00000394536 CCDC9Q9Y3X0 531 aaKnown RBP19.62■□□□□ 0.73
PCDH1-203ENST00000394536 LRRCC1Q9C099 1032 aa19.61■□□□□ 0.73
PCDH1-203ENST00000394536 CWC22Q9HCG8 908 aaKnown RBP19.61■□□□□ 0.73
PCDH1-203ENST00000394536 GAS2L3Q86XJ1 694 aa19.61■□□□□ 0.73
PCDH1-203ENST00000394536 PHF23Q9BUL5 403 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-203ENST00000394536 DIAPH3Q9NSV4 1193 aa19.6■□□□□ 0.73
PCDH1-203ENST00000394536 NPATQ14207 1427 aa19.6■□□□□ 0.73
PCDH1-203ENST00000394536 TRPM2O94759 1503 aa19.6■□□□□ 0.73
PCDH1-203ENST00000394536 VPS37CA5D8V6 355 aaPredicted RBP19.6■□□□□ 0.73
PCDH1-203ENST00000394536 ZSCAN30Q86W11 494 aa19.6■□□□□ 0.73
PCDH1-203ENST00000394536 SBNO2Q9Y2G9 1366 aa19.6■□□□□ 0.73
PCDH1-203ENST00000394536 GNAI3P08754 354 aa19.59■□□□□ 0.73
PCDH1-203ENST00000394536 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.59■□□□□ 0.73
PCDH1-203ENST00000394536 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.59■□□□□ 0.73
PCDH1-203ENST00000394536 NUTM1Q86Y26 1132 aa19.59■□□□□ 0.73
PCDH1-203ENST00000394536 MYO5CQ9NQX4 1742 aa19.59■□□□□ 0.73
PCDH1-203ENST00000394536 PUS7Q96PZ0 661 aaKnown RBP19.59■□□□□ 0.73
PCDH1-203ENST00000394536 EID1Q9Y6B2 187 aa19.59■□□□□ 0.73
PCDH1-203ENST00000394536 IQGAP3Q86VI3 1631 aa19.59■□□□□ 0.73
PCDH1-203ENST00000394536 ZNF518AQ6AHZ1 1483 aa19.58■□□□□ 0.73
PCDH1-203ENST00000394536 PHF14O94880 888 aa19.58■□□□□ 0.73
PCDH1-203ENST00000394536 KLHL40Q2TBA0 621 aa19.58■□□□□ 0.73
PCDH1-203ENST00000394536 ZNF692Q9BU19 519 aaPredicted RBP19.58■□□□□ 0.73
PCDH1-203ENST00000394536 XPCQ01831 940 aaPredicted RBP19.58■□□□□ 0.72
PCDH1-203ENST00000394536 CHAMP1Q96JM3 812 aa19.58■□□□□ 0.72
PCDH1-203ENST00000394536 FIBPO43427 364 aa19.57■□□□□ 0.72
PCDH1-203ENST00000394536 DCTPP1Q9H773 170 aa19.57■□□□□ 0.72
PCDH1-203ENST00000394536 C9orf78Q9NZ63 289 aaPredicted RBP19.57■□□□□ 0.72
PCDH1-203ENST00000394536 CCT4P50991 539 aaKnown RBP19.57■□□□□ 0.72
PCDH1-203ENST00000394536 TEFQ10587 303 aa19.57■□□□□ 0.72
PCDH1-203ENST00000394536 CCDC30Q5VVM6 783 aa19.57■□□□□ 0.72
PCDH1-203ENST00000394536 DDX54Q8TDD1 881 aaKnown RBP19.57■□□□□ 0.72
PCDH1-203ENST00000394536 SMC3Q9UQE7 1217 aa19.57■□□□□ 0.72
PCDH1-203ENST00000394536 FOXO3O43524 673 aa19.56■□□□□ 0.72
PCDH1-203ENST00000394536 ANKRD44Q8N8A2 993 aa19.56■□□□□ 0.72
PCDH1-203ENST00000394536 HDGFL1Q5TGJ6 251 aa19.55■□□□□ 0.72
PCDH1-203ENST00000394536 ZSCAN23Q3MJ62 389 aa19.55■□□□□ 0.72
PCDH1-203ENST00000394536 MBD3O95983 291 aa19.55■□□□□ 0.72
PCDH1-203ENST00000394536 UNC13BO14795 1591 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 PKP1Q13835 747 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 CLTCL1P53675 1640 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 GSPT1P15170 499 aaKnown RBP19.54■□□□□ 0.72
PCDH1-203ENST00000394536 MX1P20591 662 aa19.54■□□□□ 0.72
PCDH1-203ENST00000394536 CHAF1AQ13111 956 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms