RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FRAT2O75474 233 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-205ENST00000392004 BCAR3O75815 825 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 NBPF6Q5VWK0 638 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 NBPF4Q96M43 638 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 KCNQ4P56696 695 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 NEXNQ0ZGT2 675 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 ARHGAP31Q2M1Z3 1444 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 PER1O15534 1290 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-205ENST00000392004 NFE2L2Q16236 605 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 QTRT2Q9H974 415 aaKnown RBP12.97□□□□□ -0.33
COL6A3-205ENST00000392004 CEP152O94986 1710 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
COL6A3-205ENST00000392004 RIMS1Q86UR5 1692 aaKnown RBP12.97□□□□□ -0.33
COL6A3-205ENST00000392004 PLEKHG3A1L390 1219 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 G3V3G9 751 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 KRT24Q2M2I5 525 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 GORABQ5T7V8 394 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 DCAF8Q5TAQ9 597 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 KIAA0232Q92628 1395 aa12.96□□□□□ -0.33
COL6A3-205ENST00000392004 IL2RBP14784 551 aa12.95□□□□□ -0.34
COL6A3-205ENST00000392004 JARID2Q92833 1246 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-205ENST00000392004 MTHFSDQ2M296 383 aaKnown RBP12.95□□□□□ -0.34
COL6A3-205ENST00000392004 IFNL2Q8IZJ0 200 aa12.95□□□□□ -0.34
COL6A3-205ENST00000392004 C1orf115Q9H7X2 142 aa12.95□□□□□ -0.34
COL6A3-205ENST00000392004 ANO8Q9HCE9 1232 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-205ENST00000392004 RTN4Q9NQC3 1192 aaKnown RBP12.95□□□□□ -0.34
COL6A3-205ENST00000392004 GCC2Q8IWJ2 1684 aa12.95□□□□□ -0.34
COL6A3-205ENST00000392004 WWC1Q8IX03 1113 aa12.94□□□□□ -0.34
COL6A3-205ENST00000392004 ZNF219Q9P2Y4 722 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-205ENST00000392004 ARHGEF40Q8TER5 1519 aa12.94□□□□□ -0.34
COL6A3-205ENST00000392004 TRPM2O94759 1503 aa12.94□□□□□ -0.34
COL6A3-205ENST00000392004 TMX4Q9H1E5 349 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-205ENST00000392004 IP6K1Q92551 441 aa12.94□□□□□ -0.34
COL6A3-205ENST00000392004 PIK3C2GO75747 1445 aa12.94□□□□□ -0.34
COL6A3-205ENST00000392004 PLXNC1O60486 1568 aa12.93□□□□□ -0.34
COL6A3-205ENST00000392004 EXOC6Q8TAG9 804 aa12.93□□□□□ -0.34
COL6A3-205ENST00000392004 GPTP24298 496 aa12.93□□□□□ -0.34
COL6A3-205ENST00000392004 ZKSCAN2Q63HK3 967 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 ZBTB3Q9H5J0 574 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 MAP3K4Q9Y6R4 1608 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 MADDQ8WXG6 1647 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 PRIM1P49642 420 aaKnown RBP12.92□□□□□ -0.34
COL6A3-205ENST00000392004 MS4A1P11836 297 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 FBXW7Q969H0 707 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 CLTCL1P53675 1640 aa12.92□□□□□ -0.34
COL6A3-205ENST00000392004 CRBNQ96SW2 442 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 SETD1BQ9UPS6 1966 aaKnown RBP12.91□□□□□ -0.34
COL6A3-205ENST00000392004 CAMSAP1Q5T5Y3 1602 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 INO80Q9ULG1 1556 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-205ENST00000392004 F6X3S4 739 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 DUSP27Q5VZP5 1158 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 RNF17Q9BXT8 1623 aaKnown RBP12.91□□□□□ -0.34
COL6A3-205ENST00000392004 KDM5CP41229 1560 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
COL6A3-205ENST00000392004 HSP90AA1P07900 732 aaKnown RBP12.91□□□□□ -0.34
COL6A3-205ENST00000392004 LGR6Q9HBX8 967 aa12.91□□□□□ -0.34
COL6A3-205ENST00000392004 HSP90AB1P08238 724 aaKnown RBP12.9□□□□□ -0.34
COL6A3-205ENST00000392004 AMOTQ4VCS5 1084 aa12.9□□□□□ -0.34
COL6A3-205ENST00000392004 TAF7Q15545 349 aaPredicted RBP12.9□□□□□ -0.34
COL6A3-205ENST00000392004 AXIN2Q9Y2T1 843 aa12.89□□□□□ -0.35
COL6A3-205ENST00000392004 PPRC1Q5VV67 1664 aaKnown RBP12.89□□□□□ -0.35
COL6A3-205ENST00000392004 FLT4P35916 1363 aa12.89□□□□□ -0.35
COL6A3-205ENST00000392004 CCDC30Q5VVM6 783 aa12.89□□□□□ -0.35
COL6A3-205ENST00000392004 TET3O43151 1660 aa12.89□□□□□ -0.35
COL6A3-205ENST00000392004 IL27Q8NEV9 243 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 ADGRL3Q9HAR2 1447 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 ATP5J2-PTCD1G3V325 749 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 ATP6V1AP38606 617 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 NOB1Q9ULX3 412 aaKnown RBP12.88□□□□□ -0.35
COL6A3-205ENST00000392004 DZIP1LQ8IYY4 767 aaKnown RBP12.88□□□□□ -0.35
COL6A3-205ENST00000392004 CHMP4AQ9BY43 222 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 FRMPD1Q5SYB0 1578 aa12.88□□□□□ -0.35
COL6A3-205ENST00000392004 KIF6Q6ZMV9 814 aa12.87□□□□□ -0.35
COL6A3-205ENST00000392004 UPF2Q9HAU5 1272 aaKnown RBP12.87□□□□□ -0.35
COL6A3-205ENST00000392004 ISY1Q9ULR0 285 aaKnown RBP12.87□□□□□ -0.35
COL6A3-205ENST00000392004 TBC1D2BQ9UPU7 963 aa12.87□□□□□ -0.35
COL6A3-205ENST00000392004 KCNJ4P48050 445 aa12.87□□□□□ -0.35
COL6A3-205ENST00000392004 DDRGK1Q96HY6 314 aa12.87□□□□□ -0.35
COL6A3-205ENST00000392004 SIL1Q9H173 461 aa12.87□□□□□ -0.35
COL6A3-205ENST00000392004 STARD3NLO95772 234 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 TPRNQ4KMQ1 711 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 CCDC24Q8N4L8 307 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 SIRT1Q96EB6 747 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 PDE4AP27815 886 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 TRIM37O94972 964 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 NAP1L2Q9ULW6 460 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-205ENST00000392004 NINLQ9Y2I6 1382 aa12.86□□□□□ -0.35
COL6A3-205ENST00000392004 E9PCH4 1651 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 TRIM6-TRIM34B2RNG4 842 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 APBA3O96018 575 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 ANKRD45Q5TZF3 282 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 TFCP2L1Q9NZI6 479 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 AFF2P51816 1311 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 AGLP35573 1532 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 ARHGEF25Q86VW2 580 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 AK7Q96M32 723 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 RNF123Q5XPI4 1314 aa12.85□□□□□ -0.35
COL6A3-205ENST00000392004 ARHGEF10O15013 1369 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
COL6A3-205ENST00000392004 ADAMTS13Q76LX8 1427 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms