RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PNNQ9H307 717 aaKnown RBP17.11■□□□□ 0.33
CCDC3-202ENST00000378839 ITSN1Q15811 1721 aa17.11■□□□□ 0.33
CCDC3-202ENST00000378839 FAM83GA6ND36 823 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 HDGFP51858 240 aaKnown RBP17.1■□□□□ 0.33
CCDC3-202ENST00000378839 NRKQ7Z2Y5 1582 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 PLEKHG1Q9ULL1 1385 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 ITPRIPQ8IWB1 547 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 PLPPR3Q6T4P5 718 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 DDRGK1Q96HY6 314 aa17.1■□□□□ 0.33
CCDC3-202ENST00000378839 ACEP12821 1306 aa17.09■□□□□ 0.33
CCDC3-202ENST00000378839 TOPAZ1Q8N9V7 1692 aa17.09■□□□□ 0.33
CCDC3-202ENST00000378839 ZNF853P0CG23 659 aa17.09■□□□□ 0.33
CCDC3-202ENST00000378839 AEBP1Q8IUX7 1158 aa17.09■□□□□ 0.33
CCDC3-202ENST00000378839 RWDD1Q9H446 243 aaPredicted RBP17.09■□□□□ 0.33
CCDC3-202ENST00000378839 DLG5Q8TDM6 1919 aa17.09■□□□□ 0.33
CCDC3-202ENST00000378839 VAMP4O75379 141 aa17.08■□□□□ 0.33
CCDC3-202ENST00000378839 DCTN1Q14203 1278 aa17.08■□□□□ 0.33
CCDC3-202ENST00000378839 TTC21BQ7Z4L5 1316 aa17.08■□□□□ 0.32
CCDC3-202ENST00000378839 MBIPQ9NS73 344 aa17.08■□□□□ 0.32
CCDC3-202ENST00000378839 ZBTB40Q9NUA8 1239 aa17.08■□□□□ 0.32
CCDC3-202ENST00000378839 ELL2O00472 640 aaPredicted RBP17.07■□□□□ 0.32
CCDC3-202ENST00000378839 IL27Q8NEV9 243 aa17.07■□□□□ 0.32
CCDC3-202ENST00000378839 PEAK1Q9H792 1746 aa17.07■□□□□ 0.32
CCDC3-202ENST00000378839 ZNF692Q9BU19 519 aaPredicted RBP17.06■□□□□ 0.32
CCDC3-202ENST00000378839 EIF4A2Q14240 407 aaKnown RBP17.06■□□□□ 0.32
CCDC3-202ENST00000378839 ALDH1L2Q3SY69 923 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 OVOS2A0A0J9YW53 1432 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 OVOS2Q6IE36 1432 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 MRPL50Q8N5N7 158 aaKnown RBP17.05■□□□□ 0.32
CCDC3-202ENST00000378839 DDX19BQ9UMR2 479 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 PLEKHG3A1L390 1219 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 HDAC1Q13547 482 aaPredicted RBP17.05■□□□□ 0.32
CCDC3-202ENST00000378839 C8orf58Q8NAV2 365 aa17.05■□□□□ 0.32
CCDC3-202ENST00000378839 NEFMP07197 916 aa17.04■□□□□ 0.32
CCDC3-202ENST00000378839 USP6P35125 1406 aa17.04■□□□□ 0.32
CCDC3-202ENST00000378839 SSH2Q76I76 1423 aa17.04■□□□□ 0.32
CCDC3-202ENST00000378839 IFT57Q9NWB7 429 aa17.03■□□□□ 0.32
CCDC3-202ENST00000378839 AMOTL2Q9Y2J4 779 aa17.03■□□□□ 0.32
CCDC3-202ENST00000378839 HSP90AB2PQ58FF8 381 aa17.03■□□□□ 0.32
CCDC3-202ENST00000378839 BRPF1P55201 1214 aaPredicted RBP17.03■□□□□ 0.32
CCDC3-202ENST00000378839 KIF16BQ96L93 1317 aa17.03■□□□□ 0.32
CCDC3-202ENST00000378839 ARHGAP23Q9P227 1491 aa17.02■□□□□ 0.32
CCDC3-202ENST00000378839 SULT6B1Q6IMI4 303 aa17.01■□□□□ 0.31
CCDC3-202ENST00000378839 SLIT1O75093 1534 aa17.01■□□□□ 0.31
CCDC3-202ENST00000378839 SOX12O15370 315 aa17.01■□□□□ 0.31
CCDC3-202ENST00000378839 SMC5Q8IY18 1101 aa17.01■□□□□ 0.31
CCDC3-202ENST00000378839 NALCNQ8IZF0 1738 aa17■□□□□ 0.31
CCDC3-202ENST00000378839 GNAI1P63096 354 aa17■□□□□ 0.31
CCDC3-202ENST00000378839 KRT24Q2M2I5 525 aa17■□□□□ 0.31
CCDC3-202ENST00000378839 CFAP44Q96MT7 982 aa17■□□□□ 0.31
CCDC3-202ENST00000378839 RGPD8O14715 1765 aaPredicted RBP17■□□□□ 0.31
CCDC3-202ENST00000378839 ZBTB7BO15156 539 aaPredicted RBP17■□□□□ 0.31
CCDC3-202ENST00000378839 RTL5Q5HYW3 569 aaPredicted RBP17■□□□□ 0.31
CCDC3-202ENST00000378839 IPO8O15397 1037 aaKnown RBP16.99■□□□□ 0.31
CCDC3-202ENST00000378839 C1orf115Q9H7X2 142 aa16.99■□□□□ 0.31
CCDC3-202ENST00000378839 FER1L4A9Z1Z3 1794 aa16.99■□□□□ 0.31
CCDC3-202ENST00000378839 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
CCDC3-202ENST00000378839 PTCH1Q13635 1447 aa16.98■□□□□ 0.31
CCDC3-202ENST00000378839 USP31Q70CQ4 1352 aa16.98■□□□□ 0.31
CCDC3-202ENST00000378839 TWISTNBQ3B726 338 aaPredicted RBP16.98■□□□□ 0.31
CCDC3-202ENST00000378839 PIK3R4Q99570 1358 aa16.98■□□□□ 0.31
CCDC3-202ENST00000378839 ADAMTSL3P82987 1691 aa16.97■□□□□ 0.31
CCDC3-202ENST00000378839 MCM10Q7L590 875 aa16.97■□□□□ 0.31
CCDC3-202ENST00000378839 EID1Q9Y6B2 187 aa16.97■□□□□ 0.31
CCDC3-202ENST00000378839 SIRT2Q8IXJ6 389 aa16.97■□□□□ 0.31
CCDC3-202ENST00000378839 TBX22Q9Y458 520 aa16.97■□□□□ 0.31
CCDC3-202ENST00000378839 NFKBIBQ15653 356 aa16.96■□□□□ 0.31
CCDC3-202ENST00000378839 ZNF428Q96B54 188 aa16.96■□□□□ 0.31
CCDC3-202ENST00000378839 DIP2AQ14689 1571 aa16.96■□□□□ 0.3
CCDC3-202ENST00000378839 ABCC4O15439 1325 aa16.96■□□□□ 0.3
CCDC3-202ENST00000378839 RIMS1Q86UR5 1692 aaKnown RBP16.96■□□□□ 0.3
CCDC3-202ENST00000378839 TBC1D32Q96NH3 1257 aa16.95■□□□□ 0.3
CCDC3-202ENST00000378839 MAP3K19Q56UN5 1328 aa16.95■□□□□ 0.3
CCDC3-202ENST00000378839 CALD1Q05682 793 aaKnown RBP16.95■□□□□ 0.3
CCDC3-202ENST00000378839 FOXO3O43524 673 aa16.95■□□□□ 0.3
CCDC3-202ENST00000378839 ARHGAP45Q92619 1136 aa16.95■□□□□ 0.3
CCDC3-202ENST00000378839 NUCB1Q02818 461 aa16.94■□□□□ 0.3
CCDC3-202ENST00000378839 EIF5BO60841 1220 aaKnown RBP16.93■□□□□ 0.3
CCDC3-202ENST00000378839 LNPKQ9C0E8 428 aa16.93■□□□□ 0.3
CCDC3-202ENST00000378839 LMOD3Q0VAK6 560 aa16.92■□□□□ 0.3
CCDC3-202ENST00000378839 PIK3C2AO00443 1686 aa16.92■□□□□ 0.3
CCDC3-202ENST00000378839 KCNA6P17658 529 aa16.92■□□□□ 0.3
CCDC3-202ENST00000378839 USP35Q9P2H5 1018 aa16.92■□□□□ 0.3
CCDC3-202ENST00000378839 DAXXQ9UER7 740 aaPredicted RBP16.92■□□□□ 0.3
CCDC3-202ENST00000378839 XRN1Q8IZH2 1706 aaKnown RBP16.92■□□□□ 0.3
CCDC3-202ENST00000378839 CHL1O00533 1208 aa16.91■□□□□ 0.3
CCDC3-202ENST00000378839 MIS18AQ9NYP9 233 aa16.91■□□□□ 0.3
CCDC3-202ENST00000378839 RGS12O14924 1447 aa16.91■□□□□ 0.3
CCDC3-202ENST00000378839 CEP170BQ9Y4F5 1589 aaPredicted RBP16.91■□□□□ 0.3
CCDC3-202ENST00000378839 CRB1P82279 1406 aa16.91■□□□□ 0.3
CCDC3-202ENST00000378839 MARF1Q9Y4F3 1742 aaKnown RBP16.89■□□□□ 0.3
CCDC3-202ENST00000378839 MTHFSDQ2M296 383 aaKnown RBP16.89■□□□□ 0.3
CCDC3-202ENST00000378839 NUTM2GQ5VZR2 741 aa16.89■□□□□ 0.3
CCDC3-202ENST00000378839 CHD1LQ86WJ1 897 aa16.89■□□□□ 0.3
CCDC3-202ENST00000378839 THEMISQ8N1K5 641 aaPredicted RBP16.89■□□□□ 0.3
CCDC3-202ENST00000378839 FRAT2O75474 233 aaPredicted RBP16.89■□□□□ 0.29
CCDC3-202ENST00000378839 NGDNQ8NEJ9 315 aaKnown RBP16.89■□□□□ 0.29
CCDC3-202ENST00000378839 FMN2Q9NZ56 1722 aa16.89■□□□□ 0.29
CCDC3-202ENST00000378839 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
CCDC3-202ENST00000378839 RBM33Q96EV2 1170 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms