RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 NUDT16Q96DE0 195 aaKnown RBP24.7■■□□□ 1.54
SHROOM1-202ENST00000378676 TBC1D2Q9BYX2 928 aa24.69■■□□□ 1.54
SHROOM1-202ENST00000378676 TECPR2O15040 1411 aa24.69■■□□□ 1.54
SHROOM1-202ENST00000378676 UBR1Q8IWV7 1749 aa24.69■■□□□ 1.54
SHROOM1-202ENST00000378676 TSPYL6Q8N831 410 aa24.69■■□□□ 1.54
SHROOM1-202ENST00000378676 NRKQ7Z2Y5 1582 aa24.69■■□□□ 1.54
SHROOM1-202ENST00000378676 PTCH1Q13635 1447 aa24.68■■□□□ 1.54
SHROOM1-202ENST00000378676 VAMP4O75379 141 aa24.68■■□□□ 1.54
SHROOM1-202ENST00000378676 BRPF1P55201 1214 aaPredicted RBP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 RRS1Q15050 365 aaKnown RBP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 ESF1Q9H501 851 aaKnown RBP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 ANTXR1Q9H6X2 564 aa24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 ANO8Q9HCE9 1232 aaPredicted RBP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 MRPL50Q8N5N7 158 aaKnown RBP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.67■■□□□ 1.54
SHROOM1-202ENST00000378676 MFAP1P55081 439 aaKnown RBP24.66■■□□□ 1.54
SHROOM1-202ENST00000378676 MBIPQ9NS73 344 aa24.66■■□□□ 1.54
SHROOM1-202ENST00000378676 ZNF853P0CG23 659 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 ZNF428Q96B54 188 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 IFT57Q9NWB7 429 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 PRR36Q9H6K5 1346 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 TOPAZ1Q8N9V7 1692 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 COG3Q96JB2 828 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 PIK3R4Q99570 1358 aa24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.65■■□□□ 1.54
SHROOM1-202ENST00000378676 GNAI1P63096 354 aa24.64■■□□□ 1.53
SHROOM1-202ENST00000378676 NUCB1Q02818 461 aa24.64■■□□□ 1.53
SHROOM1-202ENST00000378676 C22orf23Q9BZE7 217 aa24.63■■□□□ 1.53
SHROOM1-202ENST00000378676 CCDC61Q9Y6R9 512 aa24.63■■□□□ 1.53
SHROOM1-202ENST00000378676 ELL2O00472 640 aaPredicted RBP24.62■■□□□ 1.53
SHROOM1-202ENST00000378676 CALD1Q05682 793 aaKnown RBP24.62■■□□□ 1.53
SHROOM1-202ENST00000378676 LNPKQ9C0E8 428 aa24.62■■□□□ 1.53
SHROOM1-202ENST00000378676 FAM83GA6ND36 823 aa24.61■■□□□ 1.53
SHROOM1-202ENST00000378676 ZBTB7BO15156 539 aaPredicted RBP24.61■■□□□ 1.53
SHROOM1-202ENST00000378676 C1orf115Q9H7X2 142 aa24.61■■□□□ 1.53
SHROOM1-202ENST00000378676 TNRQ92752 1358 aa24.6■■□□□ 1.53
SHROOM1-202ENST00000378676 ROBO2Q9HCK4 1378 aa24.6■■□□□ 1.53
SHROOM1-202ENST00000378676 SIRT1Q96EB6 747 aa24.59■■□□□ 1.53
SHROOM1-202ENST00000378676 NALCNQ8IZF0 1738 aa24.59■■□□□ 1.53
SHROOM1-202ENST00000378676 ABCC4O15439 1325 aa24.59■■□□□ 1.53
SHROOM1-202ENST00000378676 ARHGAP45Q92619 1136 aa24.59■■□□□ 1.53
SHROOM1-202ENST00000378676 PEAK1Q9H792 1746 aa24.59■■□□□ 1.53
SHROOM1-202ENST00000378676 TWISTNBQ3B726 338 aaPredicted RBP24.58■■□□□ 1.53
SHROOM1-202ENST00000378676 CHD1LQ86WJ1 897 aa24.58■■□□□ 1.53
SHROOM1-202ENST00000378676 C8orf58Q8NAV2 365 aa24.58■■□□□ 1.53
SHROOM1-202ENST00000378676 BRPF3Q9ULD4 1205 aa24.58■■□□□ 1.53
SHROOM1-202ENST00000378676 ADAMTS13Q76LX8 1427 aa24.57■■□□□ 1.52
SHROOM1-202ENST00000378676 DCTN1Q14203 1278 aa24.57■■□□□ 1.52
SHROOM1-202ENST00000378676 TMEM2Q9UHN6 1383 aa24.57■■□□□ 1.52
SHROOM1-202ENST00000378676 CFAP44Q96MT7 982 aa24.57■■□□□ 1.52
SHROOM1-202ENST00000378676 SPRYD3Q8NCJ5 442 aa24.56■■□□□ 1.52
SHROOM1-202ENST00000378676 LMOD3Q0VAK6 560 aa24.56■■□□□ 1.52
SHROOM1-202ENST00000378676 RGPD1P0DJD0 1748 aa24.55■■□□□ 1.52
SHROOM1-202ENST00000378676 AEBP1Q8IUX7 1158 aa24.54■■□□□ 1.52
SHROOM1-202ENST00000378676 SIRT2Q8IXJ6 389 aa24.53■■□□□ 1.52
SHROOM1-202ENST00000378676 OVOS2A0A0J9YW53 1432 aa24.53■■□□□ 1.52
SHROOM1-202ENST00000378676 OVOS2Q6IE36 1432 aa24.53■■□□□ 1.52
SHROOM1-202ENST00000378676 RTN4Q9NQC3 1192 aaKnown RBP24.52■■□□□ 1.52
SHROOM1-202ENST00000378676 FMN2Q9NZ56 1722 aa24.52■■□□□ 1.52
SHROOM1-202ENST00000378676 EIF4A2Q14240 407 aaKnown RBP24.52■■□□□ 1.52
SHROOM1-202ENST00000378676 ZNF692Q9BU19 519 aaPredicted RBP24.52■■□□□ 1.52
SHROOM1-202ENST00000378676 ANKRD45Q5TZF3 282 aa24.51■■□□□ 1.51
SHROOM1-202ENST00000378676 HDGFP51858 240 aaKnown RBP24.51■■□□□ 1.51
SHROOM1-202ENST00000378676 TTC21BQ7Z4L5 1316 aa24.51■■□□□ 1.51
SHROOM1-202ENST00000378676 GCC1Q96CN9 775 aa24.5■■□□□ 1.51
SHROOM1-202ENST00000378676 RIMS1Q86UR5 1692 aaKnown RBP24.5■■□□□ 1.51
SHROOM1-202ENST00000378676 ACEP12821 1306 aa24.49■■□□□ 1.51
SHROOM1-202ENST00000378676 NUTM2FA1L443 756 aa24.49■■□□□ 1.51
SHROOM1-202ENST00000378676 BMP2KLQ5H9B9 411 aa24.49■■□□□ 1.51
SHROOM1-202ENST00000378676 SULT6B1Q6IMI4 303 aa24.49■■□□□ 1.51
SHROOM1-202ENST00000378676 CHMP4BQ9H444 224 aaKnown RBP24.49■■□□□ 1.51
SHROOM1-202ENST00000378676 USP6P35125 1406 aa24.47■■□□□ 1.51
SHROOM1-202ENST00000378676 API5Q9BZZ5 524 aaKnown RBP24.47■■□□□ 1.51
SHROOM1-202ENST00000378676 RBM25P49756 843 aaKnown RBP24.46■■□□□ 1.51
SHROOM1-202ENST00000378676 KRT24Q2M2I5 525 aa24.46■■□□□ 1.51
SHROOM1-202ENST00000378676 RGPD8O14715 1765 aaPredicted RBP24.46■■□□□ 1.51
SHROOM1-202ENST00000378676 RGS12O14924 1447 aa24.45■■□□□ 1.51
SHROOM1-202ENST00000378676 PTPRUQ92729 1446 aa24.45■■□□□ 1.5
SHROOM1-202ENST00000378676 LTKP29376 864 aa24.45■■□□□ 1.5
SHROOM1-202ENST00000378676 PLEKHG1Q9ULL1 1385 aa24.44■■□□□ 1.5
SHROOM1-202ENST00000378676 FER1L4A9Z1Z3 1794 aa24.44■■□□□ 1.5
SHROOM1-202ENST00000378676 NCOA3Q9Y6Q9 1424 aa24.43■■□□□ 1.5
SHROOM1-202ENST00000378676 HSCBQ8IWL3 235 aa24.43■■□□□ 1.5
SHROOM1-202ENST00000378676 MCM10Q7L590 875 aa24.43■■□□□ 1.5
SHROOM1-202ENST00000378676 PLEKHG3A1L390 1219 aa24.42■■□□□ 1.5
SHROOM1-202ENST00000378676 HSP90AB2PQ58FF8 381 aa24.42■■□□□ 1.5
SHROOM1-202ENST00000378676 KIF24Q5T7B8 1368 aa24.41■■□□□ 1.5
SHROOM1-202ENST00000378676 CHMP5Q9NZZ3 219 aa24.41■■□□□ 1.5
SHROOM1-202ENST00000378676 USP31Q70CQ4 1352 aa24.4■■□□□ 1.5
SHROOM1-202ENST00000378676 SSH2Q76I76 1423 aa24.4■■□□□ 1.5
SHROOM1-202ENST00000378676 ATP10DQ9P241 1426 aa24.4■■□□□ 1.5
SHROOM1-202ENST00000378676 CHL1O00533 1208 aa24.39■■□□□ 1.49
SHROOM1-202ENST00000378676 SOX12O15370 315 aa24.39■■□□□ 1.49
SHROOM1-202ENST00000378676 TBC1D9Q6ZT07 1266 aa24.39■■□□□ 1.49
SHROOM1-202ENST00000378676 MCM4P33991 863 aa24.38■■□□□ 1.49
SHROOM1-202ENST00000378676 KIF2CQ99661 725 aa24.38■■□□□ 1.49
SHROOM1-202ENST00000378676 SLC26A8Q96RN1 970 aa24.38■■□□□ 1.49
SHROOM1-202ENST00000378676 INTS3Q68E01 1043 aaKnown RBP24.37■■□□□ 1.49
SHROOM1-202ENST00000378676 CRB1P82279 1406 aa24.37■■□□□ 1.49
SHROOM1-202ENST00000378676 MSH6P52701 1360 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms