RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FSD1Q9BTV5 496 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 RLBP1P12271 317 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.89□□□□□ -1.15
SMC1A-202ENST00000375340 EMILIN1Q9Y6C2 1016 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 KDM5BQ9UGL1 1544 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 PKNOX2Q96KN3 472 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 FAM83GA6ND36 823 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 ESPNB1AK53 854 aa7.89□□□□□ -1.15
SMC1A-202ENST00000375340 NME9Q86XW9 330 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 TPD52L1Q16890 204 aaPredicted RBP7.88□□□□□ -1.15
SMC1A-202ENST00000375340 FANCAO15360 1455 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 PSME1Q06323 249 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 CWC27Q6UX04 472 aaKnown RBP7.88□□□□□ -1.15
SMC1A-202ENST00000375340 IL1RAPL2Q9NP60 686 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 TTC5Q8N0Z6 440 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 EXOC6BQ9Y2D4 811 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 RIC3Q7Z5B4 369 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 KDM2BQ8NHM5 1336 aa7.88□□□□□ -1.15
SMC1A-202ENST00000375340 XPCQ01831 940 aaPredicted RBP7.87□□□□□ -1.15
SMC1A-202ENST00000375340 PES1O00541 588 aaKnown RBP7.87□□□□□ -1.15
SMC1A-202ENST00000375340 RASSF8Q8NHQ8 419 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 PRDM10Q9NQV6 1147 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 MYO5CQ9NQX4 1742 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 UHRF1BP1Q6BDS2 1440 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 CAMK4Q16566 473 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 CWC22Q9HCG8 908 aaKnown RBP7.87□□□□□ -1.15
SMC1A-202ENST00000375340 F6X3S4 739 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 NEXNQ0ZGT2 675 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 DDX54Q8TDD1 881 aaKnown RBP7.87□□□□□ -1.15
SMC1A-202ENST00000375340 TESK2Q96S53 571 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 CROCC2H7BZ55 1655 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 NEUROD6Q96NK8 337 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 DMRT2Q9Y5R5 561 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 FCHSD2O94868 740 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 CLSTN1O94985 981 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 RNF20Q5VTR2 975 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 POLR1AO95602 1720 aaPredicted RBP7.87□□□□□ -1.15
SMC1A-202ENST00000375340 NLRP6P59044 892 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 ATAD2Q6PL18 1390 aa7.87□□□□□ -1.15
SMC1A-202ENST00000375340 APPP05067 770 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 CCT4P50991 539 aaKnown RBP7.86□□□□□ -1.15
SMC1A-202ENST00000375340 NUCB1Q02818 461 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 HDAC5Q9UQL6 1122 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 MBIPQ9NS73 344 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 ABTB2Q8N961 1025 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 TRIM5Q9C035 493 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 CASTP20810 708 aaKnown RBP7.86□□□□□ -1.15
SMC1A-202ENST00000375340 OSCARQ8IYS5 282 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 MBD3O95983 291 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 HOMER1Q86YM7 354 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 NUP160Q12769 1436 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 USHBP1Q8N6Y0 703 aa7.86□□□□□ -1.15
SMC1A-202ENST00000375340 GNAI3P08754 354 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 ALDH1L2Q3SY69 923 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 TARBP1Q13395 1621 aaKnown RBP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 NFXL1Q6ZNB6 911 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 TRAPPC8Q9Y2L5 1435 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 ADGRL2O95490 1459 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 SPATA31E1Q6ZUB1 1445 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 SMC2O95347 1197 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 CIZ1Q9ULV3 898 aaPredicted RBP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 LETM1O95202 739 aaPredicted RBP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 XRCC6P12956 609 aaKnown RBP eCLIP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 JAKMIP1Q96N16 626 aaKnown RBP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 PDRG1Q9NUG6 133 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 KIF3AQ9Y496 699 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 RPGRIP1LQ68CZ1 1315 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 AACSQ86V21 672 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 GAS2L2Q8NHY3 880 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 RBM42Q9BTD8 480 aaKnown RBP7.85□□□□□ -1.15
SMC1A-202ENST00000375340 ZSCAN23Q3MJ62 389 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 GDPD2Q9HCC8 539 aa7.85□□□□□ -1.15
SMC1A-202ENST00000375340 TNNT3P45378 269 aaPredicted RBP7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CHMP4AQ9BY43 222 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 DDX58O95786 925 aaKnown RBP7.84□□□□□ -1.15
SMC1A-202ENST00000375340 MYL6BP14649 208 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CARD14Q9BXL6 1004 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 PSMA5P28066 241 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 HDGFL1Q5TGJ6 251 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CPLX1O14810 134 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 MX1P20591 662 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 PDE4CQ08493 712 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CCDC73Q6ZRK6 1079 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 ABCC10Q5T3U5 1492 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 PDILTQ8N807 584 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 TNMDQ9H2S6 317 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CDC42BPAQ5VT25 1732 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 HSP90AB4PQ58FF6 505 aa7.84□□□□□ -1.15
SMC1A-202ENST00000375340 UPF3BQ9BZI7 483 aaKnown RBP7.84□□□□□ -1.15
SMC1A-202ENST00000375340 CYP46A1Q9Y6A2 500 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 WDR33Q9C0J8 1336 aaKnown RBP7.83□□□□□ -1.16
SMC1A-202ENST00000375340 TTC22Q5TAA0 569 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 NOC3LQ8WTT2 800 aaKnown RBP7.83□□□□□ -1.16
SMC1A-202ENST00000375340 PIK3C2GO75747 1445 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 WASHC4Q2M389 1173 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 NUDT16Q96DE0 195 aaKnown RBP7.83□□□□□ -1.16
SMC1A-202ENST00000375340 FBXO31Q5XUX0 539 aaPredicted RBP7.83□□□□□ -1.16
SMC1A-202ENST00000375340 RNF123Q5XPI4 1314 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 SAMD9LQ8IVG5 1584 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 C16orf71Q8IYS4 520 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms