RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PPP1R9BQ96SB3 815 aa16.94■□□□□ 0.3
USP49-201ENST00000373006 ZC3H13Q5T200 1668 aaKnown RBP16.94■□□□□ 0.3
USP49-201ENST00000373006 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP49-201ENST00000373006 MSNP26038 577 aaKnown RBP16.93■□□□□ 0.3
USP49-201ENST00000373006 PUS7Q96PZ0 661 aaKnown RBP16.93■□□□□ 0.3
USP49-201ENST00000373006 TERF2IPQ9NYB0 399 aa16.93■□□□□ 0.3
USP49-201ENST00000373006 APBB1O00213 710 aa16.93■□□□□ 0.3
USP49-201ENST00000373006 COL3A1P02461 1466 aaPredicted RBP16.93■□□□□ 0.3
USP49-201ENST00000373006 ASXL2Q76L83 1435 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 CALD1Q05682 793 aaKnown RBP16.92■□□□□ 0.3
USP49-201ENST00000373006 CHAMP1Q96JM3 812 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 AK9Q5TCS8 1911 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 RPGRIP1LQ68CZ1 1315 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 FCHSD2O94868 740 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 TPM2P07951 284 aa16.92■□□□□ 0.3
USP49-201ENST00000373006 UHRF1BP1LA0JNW5 1464 aa16.91■□□□□ 0.3
USP49-201ENST00000373006 AEBP2Q6ZN18 517 aaPredicted RBP16.91■□□□□ 0.3
USP49-201ENST00000373006 PLEKHM2Q8IWE5 1019 aa16.91■□□□□ 0.3
USP49-201ENST00000373006 PRAM1Q96QH2 718 aa16.91■□□□□ 0.3
USP49-201ENST00000373006 IDI1Q13907 227 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 ZSCAN23Q3MJ62 389 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 CABP1Q9NZU7 370 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 PDE4CQ08493 712 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 RBM27Q9P2N5 1060 aaKnown RBP16.9■□□□□ 0.3
USP49-201ENST00000373006 ARAP3Q8WWN8 1544 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 GLI2P10070 1586 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 CFAP74Q9C0B2 1584 aa16.9■□□□□ 0.3
USP49-201ENST00000373006 PRPF40AO75400 957 aaKnown RBP16.89■□□□□ 0.3
USP49-201ENST00000373006 ZGPATQ8N5A5 531 aaKnown RBP16.89■□□□□ 0.3
USP49-201ENST00000373006 OTUD7AQ8TE49 926 aaPredicted RBP16.89■□□□□ 0.3
USP49-201ENST00000373006 RBSNQ9H1K0 784 aa16.89■□□□□ 0.3
USP49-201ENST00000373006 MBIPQ9NS73 344 aa16.89■□□□□ 0.3
USP49-201ENST00000373006 FOXD4L5Q5VV16 416 aaPredicted RBP16.89■□□□□ 0.29
USP49-201ENST00000373006 CLEC17AQ6ZS10 378 aa16.89■□□□□ 0.29
USP49-201ENST00000373006 FOXD4L4Q8WXT5 416 aaPredicted RBP16.89■□□□□ 0.29
USP49-201ENST00000373006 LMBRD1Q9NUN5 540 aa16.89■□□□□ 0.29
USP49-201ENST00000373006 C8orf58Q8NAV2 365 aa16.89■□□□□ 0.29
USP49-201ENST00000373006 CHMP4BQ9H444 224 aaKnown RBP16.89■□□□□ 0.29
USP49-201ENST00000373006 PPLO60437 1756 aa16.89■□□□□ 0.29
USP49-201ENST00000373006 PRIM1P49642 420 aaKnown RBP16.88■□□□□ 0.29
USP49-201ENST00000373006 RABEP1Q15276 862 aa16.88■□□□□ 0.29
USP49-201ENST00000373006 TWISTNBQ3B726 338 aaPredicted RBP16.88■□□□□ 0.29
USP49-201ENST00000373006 OFD1O75665 1012 aa16.88■□□□□ 0.29
USP49-201ENST00000373006 ARHGAP45Q92619 1136 aa16.88■□□□□ 0.29
USP49-201ENST00000373006 R3HCC1Q9Y3T6 440 aaKnown RBP16.88■□□□□ 0.29
USP49-201ENST00000373006 BRPF1P55201 1214 aaPredicted RBP16.87■□□□□ 0.29
USP49-201ENST00000373006 USP26Q9BXU7 913 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 MED14O60244 1454 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 HDGFL2Q7Z4V5 671 aaPredicted RBP16.87■□□□□ 0.29
USP49-201ENST00000373006 POLKQ9UBT6 870 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 NUCB2P80303 420 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 NFE2L2Q16236 605 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 ZNF428Q96B54 188 aa16.87■□□□□ 0.29
USP49-201ENST00000373006 FAM83GA6ND36 823 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 XPCQ01831 940 aaPredicted RBP16.86■□□□□ 0.29
USP49-201ENST00000373006 MLECQ14165 292 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 PDCL3Q9H2J4 239 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 SMARCA5O60264 1052 aaPredicted RBP16.86■□□□□ 0.29
USP49-201ENST00000373006 ZNF445P59923 1031 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 DCTN1Q14203 1278 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 ABCC4O15439 1325 aa16.86■□□□□ 0.29
USP49-201ENST00000373006 TTC22Q5TAA0 569 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 STAG3Q9UJ98 1225 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 ABCA9Q8IUA7 1624 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 GNAI1P63096 354 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 CDK19Q9BWU1 502 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 PNPLA6Q8IY17 1366 aa16.85■□□□□ 0.29
USP49-201ENST00000373006 KIDINS220Q9ULH0 1771 aa16.84■□□□□ 0.29
USP49-201ENST00000373006 IBTKQ9P2D0 1353 aaPredicted RBP16.84■□□□□ 0.29
USP49-201ENST00000373006 GPT2Q8TD30 523 aa16.84■□□□□ 0.29
USP49-201ENST00000373006 EMILIN1Q9Y6C2 1016 aa16.84■□□□□ 0.29
USP49-201ENST00000373006 LMTK2Q8IWU2 1503 aa16.84■□□□□ 0.29
USP49-201ENST00000373006 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.83■□□□□ 0.29
USP49-201ENST00000373006 DCTPP1Q9H773 170 aa16.83■□□□□ 0.29
USP49-201ENST00000373006 ARHGEF28Q8N1W1 1705 aaKnown RBP16.83■□□□□ 0.29
USP49-201ENST00000373006 LRRC7Q96NW7 1537 aa16.83■□□□□ 0.28
USP49-201ENST00000373006 CYP2E1P05181 493 aaPredicted RBP16.83■□□□□ 0.28
USP49-201ENST00000373006 SDSP20132 328 aa16.83■□□□□ 0.28
USP49-201ENST00000373006 CAMSAP1Q5T5Y3 1602 aa16.83■□□□□ 0.28
USP49-201ENST00000373006 NSFL1CQ9UNZ2 370 aaKnown RBP16.83■□□□□ 0.28
USP49-201ENST00000373006 ZDHHC9Q9Y397 364 aa16.83■□□□□ 0.28
USP49-201ENST00000373006 PIK3R4Q99570 1358 aa16.82■□□□□ 0.28
USP49-201ENST00000373006 PTCH1Q13635 1447 aa16.82■□□□□ 0.28
USP49-201ENST00000373006 INTS3Q68E01 1043 aaKnown RBP16.82■□□□□ 0.28
USP49-201ENST00000373006 IFT57Q9NWB7 429 aa16.82■□□□□ 0.28
USP49-201ENST00000373006 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.82■□□□□ 0.28
USP49-201ENST00000373006 CD163L1Q9NR16 1453 aa16.82■□□□□ 0.28
USP49-201ENST00000373006 SYCE3A1L190 88 aa16.82■□□□□ 0.28
USP49-201ENST00000373006 API5Q9BZZ5 524 aaKnown RBP16.82■□□□□ 0.28
USP49-201ENST00000373006 FGD1P98174 961 aa16.81■□□□□ 0.28
USP49-201ENST00000373006 KRT24Q2M2I5 525 aa16.81■□□□□ 0.28
USP49-201ENST00000373006 RNF214Q8ND24 703 aa16.81■□□□□ 0.28
USP49-201ENST00000373006 NOL7Q9UMY1 257 aaKnown RBP16.81■□□□□ 0.28
USP49-201ENST00000373006 FAM135BQ49AJ0 1406 aa16.81■□□□□ 0.28
USP49-201ENST00000373006 ST18O60284 1047 aa16.81■□□□□ 0.28
USP49-201ENST00000373006 FBXO31Q5XUX0 539 aaPredicted RBP16.81■□□□□ 0.28
USP49-201ENST00000373006 TMEM63CQ9P1W3 806 aa16.8■□□□□ 0.28
USP49-201ENST00000373006 ZNF853P0CG23 659 aa16.8■□□□□ 0.28
USP49-201ENST00000373006 FAM69CQ0P6D2 419 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms