RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 HSP90AB2PQ58FF8 381 aa11.16□□□□□ -0.62
TRIM55-204ENST00000353317 ABTB2Q8N961 1025 aa11.16□□□□□ -0.62
TRIM55-204ENST00000353317 NEFMP07197 916 aa11.16□□□□□ -0.62
TRIM55-204ENST00000353317 PSME1Q06323 249 aa11.15□□□□□ -0.62
TRIM55-204ENST00000353317 RUNDC1Q96C34 613 aa11.15□□□□□ -0.62
TRIM55-204ENST00000353317 MAP3K19Q56UN5 1328 aa11.15□□□□□ -0.62
TRIM55-204ENST00000353317 HMOX1P09601 288 aa11.15□□□□□ -0.62
TRIM55-204ENST00000353317 DUSP27Q5VZP5 1158 aa11.15□□□□□ -0.62
TRIM55-204ENST00000353317 CDK12Q9NYV4 1490 aaPredicted RBP11.15□□□□□ -0.62
TRIM55-204ENST00000353317 TRPM3Q9HCF6 1732 aaPredicted RBP11.14□□□□□ -0.63
TRIM55-204ENST00000353317 KDM2BQ8NHM5 1336 aa11.14□□□□□ -0.63
TRIM55-204ENST00000353317 PLEKHG5O94827 1062 aa11.14□□□□□ -0.63
TRIM55-204ENST00000353317 PHACTR3Q96KR7 559 aa11.14□□□□□ -0.63
TRIM55-204ENST00000353317 USP35Q9P2H5 1018 aa11.14□□□□□ -0.63
TRIM55-204ENST00000353317 USP54Q70EL1 1684 aa11.14□□□□□ -0.63
TRIM55-204ENST00000353317 ATF3P18847 181 aa11.13□□□□□ -0.63
TRIM55-204ENST00000353317 EIF4A2Q14240 407 aaKnown RBP11.13□□□□□ -0.63
TRIM55-204ENST00000353317 WWC1Q8IX03 1113 aa11.13□□□□□ -0.63
TRIM55-204ENST00000353317 PHF23Q9BUL5 403 aaPredicted RBP11.13□□□□□ -0.63
TRIM55-204ENST00000353317 RSPH6AQ9H0K4 717 aa11.13□□□□□ -0.63
TRIM55-204ENST00000353317 AEBP1Q8IUX7 1158 aa11.12□□□□□ -0.63
TRIM55-204ENST00000353317 KRT28Q7Z3Y7 464 aa11.12□□□□□ -0.63
TRIM55-204ENST00000353317 NCOA3Q9Y6Q9 1424 aa11.12□□□□□ -0.63
TRIM55-204ENST00000353317 SLFN5Q08AF3 891 aa11.11□□□□□ -0.63
TRIM55-204ENST00000353317 TRMT2AQ8IZ69 625 aaKnown RBP11.11□□□□□ -0.63
TRIM55-204ENST00000353317 LTN1O94822 1766 aa11.11□□□□□ -0.63
TRIM55-204ENST00000353317 PRKAR2BP31323 418 aa11.11□□□□□ -0.63
TRIM55-204ENST00000353317 RGPD1P0DJD0 1748 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 DCCP43146 1447 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 GOLGA2Q08379 1002 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 CENPQQ7L2Z9 268 aaPredicted RBP11.1□□□□□ -0.63
TRIM55-204ENST00000353317 TRIM35Q9UPQ4 493 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 DLG5Q8TDM6 1919 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 TMPOP42166 694 aaKnown RBP11.1□□□□□ -0.63
TRIM55-204ENST00000353317 DDRGK1Q96HY6 314 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 NFAT5O94916 1531 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 MSH6P52701 1360 aa11.1□□□□□ -0.63
TRIM55-204ENST00000353317 CADPS2Q86UW7 1296 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 KIF1AQ12756 1690 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 ALS2Q96Q42 1657 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 FCHSD2O94868 740 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 LMOD2Q6P5Q4 547 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 BRINP3Q76B58 766 aa11.09□□□□□ -0.63
TRIM55-204ENST00000353317 HOXC9P31274 260 aa11.08□□□□□ -0.64
TRIM55-204ENST00000353317 SLC4A3P48751 1232 aa11.08□□□□□ -0.64
TRIM55-204ENST00000353317 IL27Q8NEV9 243 aa11.08□□□□□ -0.64
TRIM55-204ENST00000353317 RGPD2P0DJD1 1756 aa11.08□□□□□ -0.64
TRIM55-204ENST00000353317 SBNO1A3KN83 1393 aa11.08□□□□□ -0.64
TRIM55-204ENST00000353317 C8orf34Q49A92 452 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 SULT6B1Q6IMI4 303 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 MED1Q15648 1581 aaPredicted RBP11.07□□□□□ -0.64
TRIM55-204ENST00000353317 RGPD5Q99666 1765 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 AMPHP49418 695 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 CABLES1Q8TDN4 633 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 SLAIN2Q9P270 581 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 PXDNQ92626 1479 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 FLT4P35916 1363 aa11.07□□□□□ -0.64
TRIM55-204ENST00000353317 GCP02774 474 aa11.06□□□□□ -0.64
TRIM55-204ENST00000353317 EYA1Q99502 592 aa11.06□□□□□ -0.64
TRIM55-204ENST00000353317 RIPK4P57078 832 aa11.06□□□□□ -0.64
TRIM55-204ENST00000353317 FAM161AQ3B820 660 aa11.06□□□□□ -0.64
TRIM55-204ENST00000353317 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.06□□□□□ -0.64
TRIM55-204ENST00000353317 THUMPD2Q9BTF0 503 aaKnown RBP11.06□□□□□ -0.64
TRIM55-204ENST00000353317 CCDC27Q2M243 656 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 LTV1Q96GA3 475 aaPredicted RBP11.05□□□□□ -0.64
TRIM55-204ENST00000353317 AXIN2Q9Y2T1 843 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 SLIT3O75094 1523 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 USP19O94966 1318 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 ZBTB7CA1YPR0 619 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 FAM83GA6ND36 823 aa11.05□□□□□ -0.64
TRIM55-204ENST00000353317 RGS3P49796 1198 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 NFKBIBQ15653 356 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 ARHGEF25Q86VW2 580 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 MAPK8IP3Q9UPT6 1336 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 LTBP4Q8N2S1 1624 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 BCAR3O75815 825 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 USHBP1Q8N6Y0 703 aa11.04□□□□□ -0.64
TRIM55-204ENST00000353317 TSR2Q969E8 191 aaKnown RBP11.04□□□□□ -0.64
TRIM55-204ENST00000353317 E9PSI1 815 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 ZC3H6P61129 1189 aaKnown RBP11.03□□□□□ -0.64
TRIM55-204ENST00000353317 DCTN1Q14203 1278 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 IP6K1Q92551 441 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 CRYBG1Q9Y4K1 1723 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 NFE2L2Q16236 605 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 WDR63Q8IWG1 891 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 NGEFQ8N5V2 710 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 NPHP3Q7Z494 1330 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 IGSF1Q8N6C5 1336 aa11.03□□□□□ -0.64
TRIM55-204ENST00000353317 SPATA31A3Q5VYP0 1347 aa11.02□□□□□ -0.65
TRIM55-204ENST00000353317 LRRC59Q96AG4 307 aaKnown RBP11.02□□□□□ -0.65
TRIM55-204ENST00000353317 PHRF1Q9P1Y6 1649 aaKnown RBP11.02□□□□□ -0.65
TRIM55-204ENST00000353317 NBPF6Q5VWK0 638 aa11.02□□□□□ -0.65
TRIM55-204ENST00000353317 NBPF4Q96M43 638 aa11.02□□□□□ -0.65
TRIM55-204ENST00000353317 KDRP35968 1356 aa11.01□□□□□ -0.65
TRIM55-204ENST00000353317 GSE1Q14687 1217 aa11.01□□□□□ -0.65
TRIM55-204ENST00000353317 RTN4Q9NQC3 1192 aaKnown RBP11.01□□□□□ -0.65
TRIM55-204ENST00000353317 DAXXQ9UER7 740 aaPredicted RBP11.01□□□□□ -0.65
TRIM55-204ENST00000353317 NCBP3Q53F19 620 aaKnown RBP11.01□□□□□ -0.65
TRIM55-204ENST00000353317 KCNH5Q8NCM2 988 aa11.01□□□□□ -0.65
TRIM55-204ENST00000353317 COL18A1P39060 1754 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms