RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ARHGEF25Q86VW2 580 aa12.21□□□□□ -0.45
USP4-202ENST00000351842 LAS1LQ9Y4W2 734 aaKnown RBP12.21□□□□□ -0.45
USP4-202ENST00000351842 OVOS2A0A0J9YW53 1432 aa12.21□□□□□ -0.45
USP4-202ENST00000351842 OVOS2Q6IE36 1432 aa12.21□□□□□ -0.45
USP4-202ENST00000351842 NEFMP07197 916 aa12.21□□□□□ -0.46
USP4-202ENST00000351842 ARHGEF10O15013 1369 aa12.21□□□□□ -0.46
USP4-202ENST00000351842 PXDNQ92626 1479 aa12.21□□□□□ -0.46
USP4-202ENST00000351842 PIK3C2AO00443 1686 aa12.21□□□□□ -0.46
USP4-202ENST00000351842 EYA1Q99502 592 aa12.2□□□□□ -0.46
USP4-202ENST00000351842 MAPK8IP3Q9UPT6 1336 aa12.2□□□□□ -0.46
USP4-202ENST00000351842 MAP2P11137 1827 aaKnown RBP12.2□□□□□ -0.46
USP4-202ENST00000351842 NBPF6Q5VWK0 638 aa12.2□□□□□ -0.46
USP4-202ENST00000351842 LARP1Q6PKG0 1096 aaKnown RBP12.2□□□□□ -0.46
USP4-202ENST00000351842 NBPF4Q96M43 638 aa12.2□□□□□ -0.46
USP4-202ENST00000351842 BRD4O60885 1362 aaPredicted RBP12.2□□□□□ -0.46
USP4-202ENST00000351842 THUMPD2Q9BTF0 503 aaKnown RBP12.2□□□□□ -0.46
USP4-202ENST00000351842 AKAP12Q02952 1782 aa12.19□□□□□ -0.46
USP4-202ENST00000351842 MON2Q7Z3U7 1717 aa12.19□□□□□ -0.46
USP4-202ENST00000351842 DCTN1Q14203 1278 aa12.19□□□□□ -0.46
USP4-202ENST00000351842 PRKCSHP14314 528 aaPredicted RBP12.18□□□□□ -0.46
USP4-202ENST00000351842 PHACTR3Q96KR7 559 aa12.18□□□□□ -0.46
USP4-202ENST00000351842 IP6K1Q92551 441 aa12.18□□□□□ -0.46
USP4-202ENST00000351842 SBNO1A3KN83 1393 aa12.18□□□□□ -0.46
USP4-202ENST00000351842 FLT4P35916 1363 aa12.18□□□□□ -0.46
USP4-202ENST00000351842 KIF20BQ96Q89 1820 aa12.18□□□□□ -0.46
USP4-202ENST00000351842 PNPLA6Q8IY17 1366 aa12.17□□□□□ -0.46
USP4-202ENST00000351842 NPC1L1Q9UHC9 1359 aa12.17□□□□□ -0.46
USP4-202ENST00000351842 IL13P35225 146 aa12.17□□□□□ -0.46
USP4-202ENST00000351842 FAM182BQ5T319 152 aa12.17□□□□□ -0.46
USP4-202ENST00000351842 DDX54Q8TDD1 881 aaKnown RBP12.17□□□□□ -0.46
USP4-202ENST00000351842 TCP11L2Q8N4U5 519 aa12.16□□□□□ -0.46
USP4-202ENST00000351842 PHLPP1O60346 1717 aa12.16□□□□□ -0.46
USP4-202ENST00000351842 KIF1AQ12756 1690 aa12.15□□□□□ -0.46
USP4-202ENST00000351842 USP31Q70CQ4 1352 aa12.15□□□□□ -0.47
USP4-202ENST00000351842 RAPGEF4Q8WZA2 1011 aa12.15□□□□□ -0.47
USP4-202ENST00000351842 USP19O94966 1318 aa12.14□□□□□ -0.47
USP4-202ENST00000351842 MED1Q15648 1581 aaPredicted RBP12.14□□□□□ -0.47
USP4-202ENST00000351842 CDCA7LQ96GN5 454 aa12.14□□□□□ -0.47
USP4-202ENST00000351842 ERBB3P21860 1342 aa12.14□□□□□ -0.47
USP4-202ENST00000351842 JCADQ9P266 1359 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 RIPK4P57078 832 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 FAM98CQ17RN3 349 aaKnown RBP12.13□□□□□ -0.47
USP4-202ENST00000351842 USP21Q9UK80 565 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 MCM10Q7L590 875 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 SYTL4Q96C24 671 aaPredicted RBP12.13□□□□□ -0.47
USP4-202ENST00000351842 PHF23Q9BUL5 403 aaPredicted RBP12.13□□□□□ -0.47
USP4-202ENST00000351842 MIS18AQ9NYP9 233 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 NRKQ7Z2Y5 1582 aa12.13□□□□□ -0.47
USP4-202ENST00000351842 SMG6Q86US8 1419 aaKnown RBP12.13□□□□□ -0.47
USP4-202ENST00000351842 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
USP4-202ENST00000351842 ELL2O00472 640 aaPredicted RBP12.11□□□□□ -0.47
USP4-202ENST00000351842 MPRIPQ6WCQ1 1025 aa12.11□□□□□ -0.47
USP4-202ENST00000351842 RUNDC1Q96C34 613 aa12.11□□□□□ -0.47
USP4-202ENST00000351842 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
USP4-202ENST00000351842 AFF2P51816 1311 aa12.11□□□□□ -0.47
USP4-202ENST00000351842 ZNF530Q6P9A1 599 aaPredicted RBP12.1□□□□□ -0.47
USP4-202ENST00000351842 INSRP06213 1382 aa12.1□□□□□ -0.47
USP4-202ENST00000351842 GOLGB1Q14789 3259 aaKnown RBP12.1□□□□□ -0.47
USP4-202ENST00000351842 TRPM3Q9HCF6 1732 aaPredicted RBP12.1□□□□□ -0.47
USP4-202ENST00000351842 MTHFSDQ2M296 383 aaKnown RBP12.1□□□□□ -0.47
USP4-202ENST00000351842 ILDR1Q86SU0 546 aaPredicted RBP12.1□□□□□ -0.47
USP4-202ENST00000351842 FBXO41Q8TF61 875 aa12.09□□□□□ -0.47
USP4-202ENST00000351842 TCERG1O14776 1098 aaKnown RBP12.09□□□□□ -0.47
USP4-202ENST00000351842 PEAK1Q9H792 1746 aa12.09□□□□□ -0.47
USP4-202ENST00000351842 LTN1O94822 1766 aa12.08□□□□□ -0.48
USP4-202ENST00000351842 TMPOP42166 694 aaKnown RBP12.08□□□□□ -0.48
USP4-202ENST00000351842 RTF1Q92541 710 aaKnown RBP12.08□□□□□ -0.48
USP4-202ENST00000351842 TSR2Q969E8 191 aaKnown RBP12.08□□□□□ -0.48
USP4-202ENST00000351842 GTF3C3Q9Y5Q9 886 aa12.08□□□□□ -0.48
USP4-202ENST00000351842 FCHSD2O94868 740 aa12.08□□□□□ -0.48
USP4-202ENST00000351842 TATP17735 454 aaPredicted RBP12.08□□□□□ -0.48
USP4-202ENST00000351842 BCL11AQ9H165 835 aa12.08□□□□□ -0.48
USP4-202ENST00000351842 RGPD5Q99666 1765 aa12.08□□□□□ -0.48
USP4-202ENST00000351842 CAMTA1Q9Y6Y1 1673 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 COL16A1Q07092 1604 aaPredicted RBP12.07□□□□□ -0.48
USP4-202ENST00000351842 NFAT5O94916 1531 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 CDK12Q9NYV4 1490 aaPredicted RBP12.07□□□□□ -0.48
USP4-202ENST00000351842 IRX6P78412 446 aaPredicted RBP12.07□□□□□ -0.48
USP4-202ENST00000351842 NHSL1Q5SYE7 1610 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 ALS2Q96Q42 1657 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 WDR17Q8IZU2 1322 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 C1orf141Q5JVX7 400 aa12.07□□□□□ -0.48
USP4-202ENST00000351842 NECTIN2Q92692 538 aa12.06□□□□□ -0.48
USP4-202ENST00000351842 ACSBG1Q96GR2 724 aa12.06□□□□□ -0.48
USP4-202ENST00000351842 QTRT2Q9H974 415 aaKnown RBP12.06□□□□□ -0.48
USP4-202ENST00000351842 SPINK5Q9NQ38 1064 aaPredicted RBP12.06□□□□□ -0.48
USP4-202ENST00000351842 IGSF1Q8N6C5 1336 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 BCL2L13Q9BXK5 485 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 LGR6Q9HBX8 967 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 LRP6O75581 1613 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 UNC5CLQ8IV45 518 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 ANKRD26Q9UPS8 1709 aa12.05□□□□□ -0.48
USP4-202ENST00000351842 AHDC1Q5TGY3 1603 aaPredicted RBP12.04□□□□□ -0.48
USP4-202ENST00000351842 IL2RBP14784 551 aa12.04□□□□□ -0.48
USP4-202ENST00000351842 PLEKHF1Q96S99 279 aa12.04□□□□□ -0.48
USP4-202ENST00000351842 RGPD2P0DJD1 1756 aa12.04□□□□□ -0.48
USP4-202ENST00000351842 NFE2L2Q16236 605 aa12.03□□□□□ -0.48
USP4-202ENST00000351842 WWC1Q8IX03 1113 aa12.03□□□□□ -0.48
USP4-202ENST00000351842 KRT24Q2M2I5 525 aa12.03□□□□□ -0.48
USP4-202ENST00000351842 PLEKHO1Q53GL0 409 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms