RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 NEK4P51957 841 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 PTPN14Q15678 1187 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.65■□□□□ 0.1
COL6A3-202ENST00000347401 EPB41L2O43491 1005 aaKnown RBP15.65■□□□□ 0.1
COL6A3-202ENST00000347401 LNPKQ9C0E8 428 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 APAF1O14727 1248 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 MCM4P33991 863 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 RNF214Q8ND24 703 aa15.65■□□□□ 0.1
COL6A3-202ENST00000347401 CCT4P50991 539 aaKnown RBP15.64■□□□□ 0.09
COL6A3-202ENST00000347401 MAP3K11Q16584 847 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 GIGYF2Q6Y7W6 1299 aaKnown RBP15.64■□□□□ 0.09
COL6A3-202ENST00000347401 ARHGAP29Q52LW3 1261 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 KIF5CO60282 957 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 GGT6Q6P531 493 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 UBE2Q2Q8WVN8 375 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 TIGD1Q96MW7 591 aa15.64■□□□□ 0.09
COL6A3-202ENST00000347401 FGFR1OPO95684 399 aaKnown RBP15.64■□□□□ 0.09
COL6A3-202ENST00000347401 TAOK3Q9H2K8 898 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 CCDC30Q5VVM6 783 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 VPS36Q86VN1 386 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 NUP62CLQ9H1M0 184 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 HFM1A2PYH4 1435 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 EHBP1Q8NDI1 1231 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 NAA15Q9BXJ9 866 aaKnown RBP15.63■□□□□ 0.09
COL6A3-202ENST00000347401 SCAND2PQ9GZW5 306 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-202ENST00000347401 CCDC102AQ96A19 550 aa15.63■□□□□ 0.09
COL6A3-202ENST00000347401 CCDC183Q5T5S1 534 aa15.62■□□□□ 0.09
COL6A3-202ENST00000347401 SPECC1LQ69YQ0 1117 aa15.62■□□□□ 0.09
COL6A3-202ENST00000347401 SENP3Q9H4L4 574 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-202ENST00000347401 TUBBP07437 444 aa15.62■□□□□ 0.09
COL6A3-202ENST00000347401 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
COL6A3-202ENST00000347401 BRPF3Q9ULD4 1205 aa15.62■□□□□ 0.09
COL6A3-202ENST00000347401 PPP1R12BO60237 982 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-202ENST00000347401 NOL7Q9UMY1 257 aaKnown RBP15.62■□□□□ 0.09
COL6A3-202ENST00000347401 ZSCAN25Q6NSZ9 544 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 WDR63Q8IWG1 891 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 BCL2L13Q9BXK5 485 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 UPF3BQ9BZI7 483 aaKnown RBP15.61■□□□□ 0.09
COL6A3-202ENST00000347401 GNAI2P04899 355 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 HMGB2P26583 209 aaKnown RBP15.61■□□□□ 0.09
COL6A3-202ENST00000347401 ME1P48163 572 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 MAP2K1Q02750 393 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-202ENST00000347401 SMC1AQ14683 1233 aaKnown RBP15.61■□□□□ 0.09
COL6A3-202ENST00000347401 FHOD3Q2V2M9 1422 aa15.61■□□□□ 0.09
COL6A3-202ENST00000347401 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.61■□□□□ 0.09
COL6A3-202ENST00000347401 PYM1Q9BRP8 204 aaKnown RBP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 KIAA1328Q86T90 577 aa15.6■□□□□ 0.09
COL6A3-202ENST00000347401 BMP2KQ9NSY1 1161 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 RRP7AQ9Y3A4 280 aaKnown RBP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 POTEJP0CG39 1038 aa15.6■□□□□ 0.09
COL6A3-202ENST00000347401 DNAAF4Q8WXU2 420 aa15.6■□□□□ 0.09
COL6A3-202ENST00000347401 BBXQ8WY36 941 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 SEPT11Q9NVA2 429 aaKnown RBP15.6■□□□□ 0.09
COL6A3-202ENST00000347401 FIBPO43427 364 aa15.6■□□□□ 0.09
COL6A3-202ENST00000347401 TAF4BQ92750 862 aa15.6■□□□□ 0.09
COL6A3-202ENST00000347401 CTNNA3Q9UI47 895 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 HS1BP3Q53T59 392 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 CECR2Q9BXF3 1484 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 ANKRD18BA2A2Z9 1011 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 CFAP57Q96MR6 1250 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 PHAXQ9H814 394 aaKnown RBP15.59■□□□□ 0.09
COL6A3-202ENST00000347401 SPC24Q8NBT2 197 aa15.59■□□□□ 0.09
COL6A3-202ENST00000347401 NBPF1Q3BBV0 1214 aa15.58■□□□□ 0.09
COL6A3-202ENST00000347401 SPATA32Q96LK8 384 aa15.58■□□□□ 0.09
COL6A3-202ENST00000347401 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.58■□□□□ 0.09
COL6A3-202ENST00000347401 V9GYY5 206 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-202ENST00000347401 DAPK1P53355 1430 aa15.58■□□□□ 0.09
COL6A3-202ENST00000347401 NACAP1Q9BZK3 213 aa15.58■□□□□ 0.08
COL6A3-202ENST00000347401 SH2B1Q9NRF2 756 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-202ENST00000347401 LRRFIP2Q9Y608 721 aaKnown RBP15.58■□□□□ 0.08
COL6A3-202ENST00000347401 HMGB1P1B2RPK0 211 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-202ENST00000347401 ANO10Q9NW15 660 aa15.58■□□□□ 0.08
COL6A3-202ENST00000347401 CASQ1P31415 396 aa15.58■□□□□ 0.08
COL6A3-202ENST00000347401 FSD1Q9BTV5 496 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 GAS2L2Q8NHY3 880 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 A6NNZ2 444 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 TUBB8Q3ZCM7 444 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 CCDC175P0C221 793 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 CCDC57Q2TAC2 916 aa15.57■□□□□ 0.08
COL6A3-202ENST00000347401 GTPBP4Q9BZE4 634 aaKnown RBP15.57■□□□□ 0.08
COL6A3-202ENST00000347401 BMS1Q14692 1282 aaKnown RBP15.57■□□□□ 0.08
COL6A3-202ENST00000347401 UVSSAQ2YD98 709 aa15.56■□□□□ 0.08
COL6A3-202ENST00000347401 GNL3LQ9NVN8 582 aaKnown RBP15.56■□□□□ 0.08
COL6A3-202ENST00000347401 SPA17Q15506 151 aa15.56■□□□□ 0.08
COL6A3-202ENST00000347401 C6orf163Q5TEZ5 329 aa15.56■□□□□ 0.08
COL6A3-202ENST00000347401 LARP1BQ659C4 914 aaKnown RBP15.56■□□□□ 0.08
COL6A3-202ENST00000347401 PRKCSHP14314 528 aaPredicted RBP15.56■□□□□ 0.08
COL6A3-202ENST00000347401 RBM10P98175 930 aaKnown RBP15.56■□□□□ 0.08
COL6A3-202ENST00000347401 CENPHQ9H3R5 247 aa15.56■□□□□ 0.08
COL6A3-202ENST00000347401 SRRTQ9BXP5 876 aaKnown RBP15.56■□□□□ 0.08
COL6A3-202ENST00000347401 TSPYL4Q9UJ04 414 aa15.56■□□□□ 0.08
COL6A3-202ENST00000347401 CCDC171Q6TFL3 1326 aa15.55■□□□□ 0.08
COL6A3-202ENST00000347401 HMGB1P09429 215 aaKnown RBP15.55■□□□□ 0.08
COL6A3-202ENST00000347401 ANKS4BQ8N8V4 417 aa15.54■□□□□ 0.08
COL6A3-202ENST00000347401 CASKIN1Q8WXD9 1431 aa15.54■□□□□ 0.08
COL6A3-202ENST00000347401 NKTRP30414 1462 aaKnown RBP15.54■□□□□ 0.08
COL6A3-202ENST00000347401 ANKRD62A6NC57 917 aa15.54■□□□□ 0.08
COL6A3-202ENST00000347401 KRT222Q8N1A0 295 aa15.54■□□□□ 0.08
COL6A3-202ENST00000347401 USO1O60763 962 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms