RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PAK3O75914 559 aaPredicted RBP16.66■□□□□ 0.26
CLK3-201ENST00000345005 ABTB2Q8N961 1025 aa16.66■□□□□ 0.26
CLK3-201ENST00000345005 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
CLK3-201ENST00000345005 PRKAR2BP31323 418 aa16.63■□□□□ 0.25
CLK3-201ENST00000345005 DCCP43146 1447 aa16.63■□□□□ 0.25
CLK3-201ENST00000345005 ZNF335Q9H4Z2 1342 aaPredicted RBP16.63■□□□□ 0.25
CLK3-201ENST00000345005 SBNO1A3KN83 1393 aa16.63■□□□□ 0.25
CLK3-201ENST00000345005 TMEM94Q12767 1356 aa16.63■□□□□ 0.25
CLK3-201ENST00000345005 ATF3P18847 181 aa16.63■□□□□ 0.25
CLK3-201ENST00000345005 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
CLK3-201ENST00000345005 RIPK4P57078 832 aa16.62■□□□□ 0.25
CLK3-201ENST00000345005 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
CLK3-201ENST00000345005 FLT4P35916 1363 aa16.62■□□□□ 0.25
CLK3-201ENST00000345005 DLG5Q8TDM6 1919 aa16.62■□□□□ 0.25
CLK3-201ENST00000345005 SOX12O15370 315 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 HMOX1P09601 288 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 EIF4A2Q14240 407 aaKnown RBP16.61■□□□□ 0.25
CLK3-201ENST00000345005 ORAI2Q96SN7 254 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 MYH16Q9H6N6 1097 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 C1orf167Q5SNV9 1468 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 RGPD1P0DJD0 1748 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 IPO9Q96P70 1041 aaKnown RBP16.61■□□□□ 0.25
CLK3-201ENST00000345005 TRIM35Q9UPQ4 493 aa16.61■□□□□ 0.25
CLK3-201ENST00000345005 XIRP1Q702N8 1843 aaKnown RBP16.6■□□□□ 0.25
CLK3-201ENST00000345005 LTN1O94822 1766 aa16.6■□□□□ 0.25
CLK3-201ENST00000345005 AMPHP49418 695 aa16.6■□□□□ 0.25
CLK3-201ENST00000345005 HSP90AB2PQ58FF8 381 aa16.6■□□□□ 0.25
CLK3-201ENST00000345005 IL16Q14005 1332 aa16.6■□□□□ 0.25
CLK3-201ENST00000345005 NFE2L2Q16236 605 aa16.59■□□□□ 0.25
CLK3-201ENST00000345005 NUTM2GQ5VZR2 741 aa16.59■□□□□ 0.25
CLK3-201ENST00000345005 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.59■□□□□ 0.25
CLK3-201ENST00000345005 TRPM3Q9HCF6 1732 aaPredicted RBP16.59■□□□□ 0.25
CLK3-201ENST00000345005 FOXO3O43524 673 aa16.59■□□□□ 0.25
CLK3-201ENST00000345005 CADPS2Q86UW7 1296 aa16.58■□□□□ 0.24
CLK3-201ENST00000345005 MST1RQ04912 1400 aa16.58■□□□□ 0.24
CLK3-201ENST00000345005 PHACTR3Q96KR7 559 aa16.57■□□□□ 0.24
CLK3-201ENST00000345005 MSH6P52701 1360 aa16.56■□□□□ 0.24
CLK3-201ENST00000345005 DEKP35659 375 aaKnown RBP16.56■□□□□ 0.24
CLK3-201ENST00000345005 ZBTB47Q9UFB7 747 aaPredicted RBP16.56■□□□□ 0.24
CLK3-201ENST00000345005 TCERG1O14776 1098 aaKnown RBP16.56■□□□□ 0.24
CLK3-201ENST00000345005 SULT6B1Q6IMI4 303 aa16.56■□□□□ 0.24
CLK3-201ENST00000345005 KRT28Q7Z3Y7 464 aa16.56■□□□□ 0.24
CLK3-201ENST00000345005 KCNH5Q8NCM2 988 aa16.56■□□□□ 0.24
CLK3-201ENST00000345005 ARHGEF10O15013 1369 aa16.55■□□□□ 0.24
CLK3-201ENST00000345005 CALD1Q05682 793 aaKnown RBP16.55■□□□□ 0.24
CLK3-201ENST00000345005 LMOD3Q0VAK6 560 aa16.55■□□□□ 0.24
CLK3-201ENST00000345005 RTL1A6NKG5 1358 aa16.55■□□□□ 0.24
CLK3-201ENST00000345005 NFAT5O94916 1531 aa16.54■□□□□ 0.24
CLK3-201ENST00000345005 PHRF1Q9P1Y6 1649 aaKnown RBP16.54■□□□□ 0.24
CLK3-201ENST00000345005 PLIN1O60240 522 aa16.54■□□□□ 0.24
CLK3-201ENST00000345005 CT47B1P0C2W7 299 aaPredicted RBP16.54■□□□□ 0.24
CLK3-201ENST00000345005 HOXC9P31274 260 aa16.54■□□□□ 0.24
CLK3-201ENST00000345005 MS4A1P11836 297 aa16.53■□□□□ 0.24
CLK3-201ENST00000345005 RTL5Q5HYW3 569 aaPredicted RBP16.53■□□□□ 0.24
CLK3-201ENST00000345005 ALS2Q96Q42 1657 aa16.52■□□□□ 0.24
CLK3-201ENST00000345005 XPCQ01831 940 aaPredicted RBP16.52■□□□□ 0.23
CLK3-201ENST00000345005 AEBP1Q8IUX7 1158 aa16.52■□□□□ 0.23
CLK3-201ENST00000345005 EXOC6Q8TAG9 804 aa16.52■□□□□ 0.23
CLK3-201ENST00000345005 SLIT3O75094 1523 aa16.51■□□□□ 0.23
CLK3-201ENST00000345005 IP6K1Q92551 441 aa16.51■□□□□ 0.23
CLK3-201ENST00000345005 IGSF1Q8N6C5 1336 aa16.5■□□□□ 0.23
CLK3-201ENST00000345005 EYA1Q99502 592 aa16.5■□□□□ 0.23
CLK3-201ENST00000345005 KDRP35968 1356 aa16.5■□□□□ 0.23
CLK3-201ENST00000345005 BCAR3O75815 825 aa16.49■□□□□ 0.23
CLK3-201ENST00000345005 LMOD2Q6P5Q4 547 aa16.49■□□□□ 0.23
CLK3-201ENST00000345005 NPHP3Q7Z494 1330 aa16.49■□□□□ 0.23
CLK3-201ENST00000345005 RARSP54136 660 aaKnown RBP16.49■□□□□ 0.23
CLK3-201ENST00000345005 TSR2Q969E8 191 aaKnown RBP16.49■□□□□ 0.23
CLK3-201ENST00000345005 USP35Q9P2H5 1018 aa16.49■□□□□ 0.23
CLK3-201ENST00000345005 USP19O94966 1318 aa16.48■□□□□ 0.23
CLK3-201ENST00000345005 GCP02774 474 aa16.48■□□□□ 0.23
CLK3-201ENST00000345005 GNAI1P63096 354 aa16.47■□□□□ 0.23
CLK3-201ENST00000345005 CRBNQ96SW2 442 aa16.47■□□□□ 0.23
CLK3-201ENST00000345005 EXOSC9Q06265 439 aaKnown RBP16.47■□□□□ 0.23
CLK3-201ENST00000345005 IFT57Q9NWB7 429 aa16.47■□□□□ 0.23
CLK3-201ENST00000345005 PDE3AQ14432 1141 aa16.45■□□□□ 0.22
CLK3-201ENST00000345005 C20orf194Q5TEA3 1177 aa16.45■□□□□ 0.22
CLK3-201ENST00000345005 ARHGEF25Q86VW2 580 aa16.45■□□□□ 0.22
CLK3-201ENST00000345005 ZNF853P0CG23 659 aa16.45■□□□□ 0.22
CLK3-201ENST00000345005 LAS1LQ9Y4W2 734 aaKnown RBP16.45■□□□□ 0.22
CLK3-201ENST00000345005 CANXP27824 592 aaKnown RBP16.44■□□□□ 0.22
CLK3-201ENST00000345005 LTV1Q96GA3 475 aaPredicted RBP16.44■□□□□ 0.22
CLK3-201ENST00000345005 CFAP44Q96MT7 982 aa16.44■□□□□ 0.22
CLK3-201ENST00000345005 RGPD2P0DJD1 1756 aa16.44■□□□□ 0.22
CLK3-201ENST00000345005 GAS2L2Q8NHY3 880 aa16.43■□□□□ 0.22
CLK3-201ENST00000345005 THUMPD2Q9BTF0 503 aaKnown RBP16.43■□□□□ 0.22
CLK3-201ENST00000345005 PXDNQ92626 1479 aa16.43■□□□□ 0.22
CLK3-201ENST00000345005 RGPD5Q99666 1765 aa16.43■□□□□ 0.22
CLK3-201ENST00000345005 ZNF428Q96B54 188 aa16.42■□□□□ 0.22
CLK3-201ENST00000345005 SLAIN2Q9P270 581 aa16.42■□□□□ 0.22
CLK3-201ENST00000345005 MED1Q15648 1581 aaPredicted RBP16.42■□□□□ 0.22
CLK3-201ENST00000345005 ZBTB7CA1YPR0 619 aa16.42■□□□□ 0.22
CLK3-201ENST00000345005 TNS3Q68CZ2 1445 aa16.41■□□□□ 0.22
CLK3-201ENST00000345005 FAM83GA6ND36 823 aa16.41■□□□□ 0.22
CLK3-201ENST00000345005 MTHFSDQ2M296 383 aaKnown RBP16.41■□□□□ 0.22
CLK3-201ENST00000345005 BRINP3Q76B58 766 aa16.41■□□□□ 0.22
CLK3-201ENST00000345005 DDX17Q92841 729 aaKnown RBP16.41■□□□□ 0.22
CLK3-201ENST00000345005 UBAP1LF5GYI3 381 aa16.4■□□□□ 0.22
CLK3-201ENST00000345005 HTATSF1O43719 755 aaKnown RBP16.4■□□□□ 0.22
CLK3-201ENST00000345005 RTF1Q92541 710 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms