RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 ADAMTS13Q76LX8 1427 aa18.89■□□□□ 0.62
VIPAS39-202ENST00000343765 SIRT1Q96EB6 747 aa18.89■□□□□ 0.62
VIPAS39-202ENST00000343765 MBIPQ9NS73 344 aa18.89■□□□□ 0.62
VIPAS39-202ENST00000343765 VIRMAQ69YN4 1812 aaKnown RBP18.89■□□□□ 0.61
VIPAS39-202ENST00000343765 ZNF692Q9BU19 519 aaPredicted RBP18.89■□□□□ 0.61
VIPAS39-202ENST00000343765 ACEP12821 1306 aa18.89■□□□□ 0.61
VIPAS39-202ENST00000343765 UBR1Q8IWV7 1749 aa18.89■□□□□ 0.61
VIPAS39-202ENST00000343765 AEBP1Q8IUX7 1158 aa18.88■□□□□ 0.61
VIPAS39-202ENST00000343765 ZBTB40Q9NUA8 1239 aa18.88■□□□□ 0.61
VIPAS39-202ENST00000343765 CALD1Q05682 793 aaKnown RBP18.88■□□□□ 0.61
VIPAS39-202ENST00000343765 KNDC1Q76NI1 1749 aa18.88■□□□□ 0.61
VIPAS39-202ENST00000343765 VAMP4O75379 141 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 GNAI1P63096 354 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 HDAC1Q13547 482 aaPredicted RBP18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 NFKBIBQ15653 356 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 IFT57Q9NWB7 429 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 USP35Q9P2H5 1018 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 TTC21BQ7Z4L5 1316 aa18.87■□□□□ 0.61
VIPAS39-202ENST00000343765 MON2Q7Z3U7 1717 aa18.86■□□□□ 0.61
VIPAS39-202ENST00000343765 UPF2Q9HAU5 1272 aaKnown RBP18.86■□□□□ 0.61
VIPAS39-202ENST00000343765 SULT6B1Q6IMI4 303 aa18.85■□□□□ 0.61
VIPAS39-202ENST00000343765 C1orf115Q9H7X2 142 aa18.85■□□□□ 0.61
VIPAS39-202ENST00000343765 ITSN1Q15811 1721 aa18.85■□□□□ 0.61
VIPAS39-202ENST00000343765 EIF4A2Q14240 407 aaKnown RBP18.85■□□□□ 0.61
VIPAS39-202ENST00000343765 MRPL50Q8N5N7 158 aaKnown RBP18.85■□□□□ 0.61
VIPAS39-202ENST00000343765 TWISTNBQ3B726 338 aaPredicted RBP18.84■□□□□ 0.61
VIPAS39-202ENST00000343765 C8orf58Q8NAV2 365 aa18.84■□□□□ 0.61
VIPAS39-202ENST00000343765 C3P01024 1663 aa18.84■□□□□ 0.61
VIPAS39-202ENST00000343765 LMOD3Q0VAK6 560 aa18.83■□□□□ 0.61
VIPAS39-202ENST00000343765 EID1Q9Y6B2 187 aa18.83■□□□□ 0.61
VIPAS39-202ENST00000343765 PLEKHG1Q9ULL1 1385 aa18.83■□□□□ 0.61
VIPAS39-202ENST00000343765 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.83■□□□□ 0.61
VIPAS39-202ENST00000343765 AKAP12Q02952 1782 aa18.83■□□□□ 0.6
VIPAS39-202ENST00000343765 ZNF853P0CG23 659 aa18.82■□□□□ 0.6
VIPAS39-202ENST00000343765 HSP90AB2PQ58FF8 381 aa18.82■□□□□ 0.6
VIPAS39-202ENST00000343765 CFAP44Q96MT7 982 aa18.82■□□□□ 0.6
VIPAS39-202ENST00000343765 PTPRUQ92729 1446 aa18.82■□□□□ 0.6
VIPAS39-202ENST00000343765 SMC5Q8IY18 1101 aa18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 ZNF428Q96B54 188 aa18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 LNPKQ9C0E8 428 aa18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 AMOTL2Q9Y2J4 779 aa18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 MFAP1P55081 439 aaKnown RBP18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 TBC1D32Q96NH3 1257 aa18.81■□□□□ 0.6
VIPAS39-202ENST00000343765 BECN1Q14457 450 aa18.8■□□□□ 0.6
VIPAS39-202ENST00000343765 MCM10Q7L590 875 aa18.79■□□□□ 0.6
VIPAS39-202ENST00000343765 SLKQ9H2G2 1235 aaPredicted RBP18.79■□□□□ 0.6
VIPAS39-202ENST00000343765 PLEKHG3A1L390 1219 aa18.79■□□□□ 0.6
VIPAS39-202ENST00000343765 KRT24Q2M2I5 525 aa18.79■□□□□ 0.6
VIPAS39-202ENST00000343765 USP6P35125 1406 aa18.79■□□□□ 0.6
VIPAS39-202ENST00000343765 ZBTB7BO15156 539 aaPredicted RBP18.78■□□□□ 0.6
VIPAS39-202ENST00000343765 BRPF1P55201 1214 aaPredicted RBP18.78■□□□□ 0.6
VIPAS39-202ENST00000343765 DLG5Q8TDM6 1919 aa18.78■□□□□ 0.6
VIPAS39-202ENST00000343765 FRAT2O75474 233 aaPredicted RBP18.77■□□□□ 0.6
VIPAS39-202ENST00000343765 OVOS2A0A0J9YW53 1432 aa18.77■□□□□ 0.6
VIPAS39-202ENST00000343765 OVOS2Q6IE36 1432 aa18.77■□□□□ 0.6
VIPAS39-202ENST00000343765 NUCB1Q02818 461 aa18.76■□□□□ 0.59
VIPAS39-202ENST00000343765 RBM33Q96EV2 1170 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-202ENST00000343765 NGDNQ8NEJ9 315 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-202ENST00000343765 PTCH1Q13635 1447 aa18.76■□□□□ 0.59
VIPAS39-202ENST00000343765 ARHGAP45Q92619 1136 aa18.76■□□□□ 0.59
VIPAS39-202ENST00000343765 ANKRD45Q5TZF3 282 aa18.75■□□□□ 0.59
VIPAS39-202ENST00000343765 CHD1LQ86WJ1 897 aa18.75■□□□□ 0.59
VIPAS39-202ENST00000343765 ABCC4O15439 1325 aa18.74■□□□□ 0.59
VIPAS39-202ENST00000343765 NRKQ7Z2Y5 1582 aa18.74■□□□□ 0.59
VIPAS39-202ENST00000343765 SPRYD3Q8NCJ5 442 aa18.74■□□□□ 0.59
VIPAS39-202ENST00000343765 C22orf23Q9BZE7 217 aa18.73■□□□□ 0.59
VIPAS39-202ENST00000343765 MAP3K19Q56UN5 1328 aa18.73■□□□□ 0.59
VIPAS39-202ENST00000343765 TBC1D2Q9BYX2 928 aa18.73■□□□□ 0.59
VIPAS39-202ENST00000343765 TOPAZ1Q8N9V7 1692 aa18.73■□□□□ 0.59
VIPAS39-202ENST00000343765 FOXO3O43524 673 aa18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 TRHP20396 242 aaPredicted RBP18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 NUTM2GQ5VZR2 741 aa18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 API5Q9BZZ5 524 aaKnown RBP18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 MIS18AQ9NYP9 233 aa18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 PIK3R4Q99570 1358 aa18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 PEAK1Q9H792 1746 aa18.72■□□□□ 0.59
VIPAS39-202ENST00000343765 SIRT2Q8IXJ6 389 aa18.71■□□□□ 0.59
VIPAS39-202ENST00000343765 CHMP4BQ9H444 224 aaKnown RBP18.7■□□□□ 0.58
VIPAS39-202ENST00000343765 TBX22Q9Y458 520 aa18.7■□□□□ 0.58
VIPAS39-202ENST00000343765 AMPHP49418 695 aa18.7■□□□□ 0.58
VIPAS39-202ENST00000343765 USP31Q70CQ4 1352 aa18.69■□□□□ 0.58
VIPAS39-202ENST00000343765 THEMISQ8N1K5 641 aaPredicted RBP18.69■□□□□ 0.58
VIPAS39-202ENST00000343765 CHL1O00533 1208 aa18.68■□□□□ 0.58
VIPAS39-202ENST00000343765 GSE1Q14687 1217 aa18.68■□□□□ 0.58
VIPAS39-202ENST00000343765 GCC1Q96CN9 775 aa18.68■□□□□ 0.58
VIPAS39-202ENST00000343765 SSH2Q76I76 1423 aa18.68■□□□□ 0.58
VIPAS39-202ENST00000343765 PLEKHG5O94827 1062 aa18.67■□□□□ 0.58
VIPAS39-202ENST00000343765 TTC21AQ8NDW8 1320 aa18.67■□□□□ 0.58
VIPAS39-202ENST00000343765 MTHFSDQ2M296 383 aaKnown RBP18.67■□□□□ 0.58
VIPAS39-202ENST00000343765 KCNA6P17658 529 aa18.66■□□□□ 0.58
VIPAS39-202ENST00000343765 NLRP6P59044 892 aa18.66■□□□□ 0.58
VIPAS39-202ENST00000343765 ARHGAP23Q9P227 1491 aa18.66■□□□□ 0.58
VIPAS39-202ENST00000343765 SLIT1O75093 1534 aa18.66■□□□□ 0.58
VIPAS39-202ENST00000343765 DIP2AQ14689 1571 aa18.66■□□□□ 0.58
VIPAS39-202ENST00000343765 RTF1Q92541 710 aaKnown RBP18.65■□□□□ 0.58
VIPAS39-202ENST00000343765 FLT4P35916 1363 aa18.65■□□□□ 0.58
VIPAS39-202ENST00000343765 NALCNQ8IZF0 1738 aa18.64■□□□□ 0.58
VIPAS39-202ENST00000343765 RGPD8O14715 1765 aaPredicted RBP18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 C14orf37Q86TY3 774 aa18.64■□□□□ 0.57
VIPAS39-202ENST00000343765 EYA1Q99502 592 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms