RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 FAM135BQ49AJ0 1406 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 EDC4Q6P2E9 1401 aaKnown RBP16.74■□□□□ 0.27
COL18A1-201ENST00000342220 RTF1Q92541 710 aaKnown RBP16.74■□□□□ 0.27
COL18A1-201ENST00000342220 ZNF428Q96B54 188 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 SIRT1Q96EB6 747 aa16.74■□□□□ 0.27
COL18A1-201ENST00000342220 CEP170BQ9Y4F5 1589 aaPredicted RBP16.73■□□□□ 0.27
COL18A1-201ENST00000342220 RGS3P49796 1198 aa16.73■□□□□ 0.27
COL18A1-201ENST00000342220 C19orf44Q9H6X5 657 aa16.73■□□□□ 0.27
COL18A1-201ENST00000342220 TMEM94Q12767 1356 aa16.73■□□□□ 0.27
COL18A1-201ENST00000342220 KRT24Q2M2I5 525 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 CPS1P31327 1500 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 DLC1Q96QB1 1528 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 BACH2Q9BYV9 841 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 PNNQ9H307 717 aaKnown RBP16.72■□□□□ 0.27
COL18A1-201ENST00000342220 FCHSD2O94868 740 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 IL13P35225 146 aa16.72■□□□□ 0.27
COL18A1-201ENST00000342220 NLRP2Q9NX02 1062 aa16.71■□□□□ 0.27
COL18A1-201ENST00000342220 RSPH6AQ9H0K4 717 aa16.7■□□□□ 0.26
COL18A1-201ENST00000342220 BRPF3Q9ULD4 1205 aa16.7■□□□□ 0.26
COL18A1-201ENST00000342220 ATP7BP35670 1465 aa16.7■□□□□ 0.26
COL18A1-201ENST00000342220 MS4A1P11836 297 aa16.69■□□□□ 0.26
COL18A1-201ENST00000342220 PIP4K2BP78356 416 aa16.69■□□□□ 0.26
COL18A1-201ENST00000342220 EYA1Q99502 592 aa16.69■□□□□ 0.26
COL18A1-201ENST00000342220 TRIM35Q9UPQ4 493 aa16.69■□□□□ 0.26
COL18A1-201ENST00000342220 SETD1BQ9UPS6 1966 aaKnown RBP16.69■□□□□ 0.26
COL18A1-201ENST00000342220 USP6P35125 1406 aa16.68■□□□□ 0.26
COL18A1-201ENST00000342220 ZNF142P52746 1687 aaPredicted RBP16.68■□□□□ 0.26
COL18A1-201ENST00000342220 ADAMTSL3P82987 1691 aa16.68■□□□□ 0.26
COL18A1-201ENST00000342220 NFE2L2Q16236 605 aa16.68■□□□□ 0.26
COL18A1-201ENST00000342220 ITPRIPQ8IWB1 547 aa16.67■□□□□ 0.26
COL18A1-201ENST00000342220 GCP02774 474 aa16.66■□□□□ 0.26
COL18A1-201ENST00000342220 STRN4Q9NRL3 753 aa16.66■□□□□ 0.26
COL18A1-201ENST00000342220 PLEKHF1Q96S99 279 aa16.66■□□□□ 0.26
COL18A1-201ENST00000342220 CPSF1Q10570 1443 aaKnown RBP16.66■□□□□ 0.26
COL18A1-201ENST00000342220 TSPYL6Q8N831 410 aa16.66■□□□□ 0.26
COL18A1-201ENST00000342220 NKTRP30414 1462 aaKnown RBP16.65■□□□□ 0.26
COL18A1-201ENST00000342220 SLIT1O75093 1534 aa16.65■□□□□ 0.26
COL18A1-201ENST00000342220 ARHGAP23Q9P227 1491 aa16.64■□□□□ 0.25
COL18A1-201ENST00000342220 HOXC9P31274 260 aa16.64■□□□□ 0.25
COL18A1-201ENST00000342220 VSIG10Q8N0Z9 540 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 SSH1Q8WYL5 1049 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 TECPR2O15040 1411 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 RARSP54136 660 aaKnown RBP16.63■□□□□ 0.25
COL18A1-201ENST00000342220 MTHFSDQ2M296 383 aaKnown RBP16.63■□□□□ 0.25
COL18A1-201ENST00000342220 CADPS2Q86UW7 1296 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 ZNF521Q96K83 1311 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 WDR63Q8IWG1 891 aa16.63■□□□□ 0.25
COL18A1-201ENST00000342220 TTC21AQ8NDW8 1320 aa16.62■□□□□ 0.25
COL18A1-201ENST00000342220 EIF2S2P20042 333 aaKnown RBP16.62■□□□□ 0.25
COL18A1-201ENST00000342220 GLIPR1L2Q4G1C9 344 aa16.62■□□□□ 0.25
COL18A1-201ENST00000342220 TSPYL4Q9UJ04 414 aa16.61■□□□□ 0.25
COL18A1-201ENST00000342220 NOB1Q9ULX3 412 aaKnown RBP16.61■□□□□ 0.25
COL18A1-201ENST00000342220 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.61■□□□□ 0.25
COL18A1-201ENST00000342220 SLC4A10Q6U841 1118 aa16.61■□□□□ 0.25
COL18A1-201ENST00000342220 ZMYND15Q9H091 742 aa16.61■□□□□ 0.25
COL18A1-201ENST00000342220 MBIPQ9NS73 344 aa16.61■□□□□ 0.25
COL18A1-201ENST00000342220 ANKRD26Q9UPS8 1709 aa16.61■□□□□ 0.25
COL18A1-201ENST00000342220 RLBP1P12271 317 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 NBPF6Q5VWK0 638 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 MPRIPQ6WCQ1 1025 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 NBPF4Q96M43 638 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 APBB1O00213 710 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 KDM2BQ8NHM5 1336 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 MED14O60244 1454 aa16.6■□□□□ 0.25
COL18A1-201ENST00000342220 MSH6P52701 1360 aa16.59■□□□□ 0.25
COL18A1-201ENST00000342220 C8orf58Q8NAV2 365 aa16.59■□□□□ 0.25
COL18A1-201ENST00000342220 C1orf115Q9H7X2 142 aa16.59■□□□□ 0.25
COL18A1-201ENST00000342220 PRDM11Q9NQV5 511 aa16.59■□□□□ 0.25
COL18A1-201ENST00000342220 NUTM2BA6NNL0 878 aaPredicted RBP16.59■□□□□ 0.25
COL18A1-201ENST00000342220 NUTM2EB1AL46 878 aaPredicted RBP16.59■□□□□ 0.25
COL18A1-201ENST00000342220 NUTM2AQ8IVF1 878 aaPredicted RBP16.59■□□□□ 0.25
COL18A1-201ENST00000342220 ADGRB2O60241 1585 aa16.59■□□□□ 0.25
COL18A1-201ENST00000342220 DIP2AQ14689 1571 aa16.58■□□□□ 0.25
COL18A1-201ENST00000342220 TWISTNBQ3B726 338 aaPredicted RBP16.58■□□□□ 0.25
COL18A1-201ENST00000342220 ANKRD24Q8TF21 1146 aa16.58■□□□□ 0.25
COL18A1-201ENST00000342220 AXIN2Q9Y2T1 843 aa16.58■□□□□ 0.24
COL18A1-201ENST00000342220 SLAIN2Q9P270 581 aa16.57■□□□□ 0.24
COL18A1-201ENST00000342220 GNAI1P63096 354 aa16.57■□□□□ 0.24
COL18A1-201ENST00000342220 ZNF530Q6P9A1 599 aaPredicted RBP16.57■□□□□ 0.24
COL18A1-201ENST00000342220 ARXQ96QS3 562 aa16.57■□□□□ 0.24
COL18A1-201ENST00000342220 ZKSCAN2Q63HK3 967 aa16.57■□□□□ 0.24
COL18A1-201ENST00000342220 PTCH1Q13635 1447 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 FLT4P35916 1363 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 EVA1CP58658 441 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 LMOD3Q0VAK6 560 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 ADAMTS2O95450 1211 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 CENPQQ7L2Z9 268 aaPredicted RBP16.56■□□□□ 0.24
COL18A1-201ENST00000342220 NGEFQ8N5V2 710 aa16.56■□□□□ 0.24
COL18A1-201ENST00000342220 TEFQ10587 303 aa16.55■□□□□ 0.24
COL18A1-201ENST00000342220 KCNH5Q8NCM2 988 aa16.55■□□□□ 0.24
COL18A1-201ENST00000342220 PIK3R4Q99570 1358 aa16.54■□□□□ 0.24
COL18A1-201ENST00000342220 DZIP1LQ8IYY4 767 aaKnown RBP16.54■□□□□ 0.24
COL18A1-201ENST00000342220 CCDC9Q9Y3X0 531 aaKnown RBP16.54■□□□□ 0.24
COL18A1-201ENST00000342220 ADGRL3Q9HAR2 1447 aa16.54■□□□□ 0.24
COL18A1-201ENST00000342220 CALD1Q05682 793 aaKnown RBP16.54■□□□□ 0.24
COL18A1-201ENST00000342220 RAPGEF4Q8WZA2 1011 aa16.54■□□□□ 0.24
COL18A1-201ENST00000342220 TOPAZ1Q8N9V7 1692 aa16.53■□□□□ 0.24
COL18A1-201ENST00000342220 ANXA1P04083 346 aa16.53■□□□□ 0.24
COL18A1-201ENST00000342220 C1orf141Q5JVX7 400 aa16.53■□□□□ 0.24
COL18A1-201ENST00000342220 TOM1L2Q6ZVM7 507 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms