RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 AMOTL2Q9Y2J4 779 aa18.97■□□□□ 0.63
CLCNKA-201ENST00000331433 TOPAZ1Q8N9V7 1692 aa18.97■□□□□ 0.63
CLCNKA-201ENST00000331433 NRKQ7Z2Y5 1582 aa18.96■□□□□ 0.63
CLCNKA-201ENST00000331433 PLEKHG3A1L390 1219 aa18.96■□□□□ 0.63
CLCNKA-201ENST00000331433 TMEM57Q8N5G2 664 aa18.96■□□□□ 0.63
CLCNKA-201ENST00000331433 KIF16BQ96L93 1317 aa18.96■□□□□ 0.63
CLCNKA-201ENST00000331433 DDX19BQ9UMR2 479 aa18.95■□□□□ 0.62
CLCNKA-201ENST00000331433 USP6P35125 1406 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 DLG5Q8TDM6 1919 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 FER1L4A9Z1Z3 1794 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 SLIT1O75093 1534 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 SLC4A3P48751 1232 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 ALDH1L2Q3SY69 923 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 VIRMAQ69YN4 1812 aaKnown RBP18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 ARHGAP23Q9P227 1491 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 FAM83GA6ND36 823 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 SOX12O15370 315 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 AEBP1Q8IUX7 1158 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 TSPYL6Q8N831 410 aa18.94■□□□□ 0.62
CLCNKA-201ENST00000331433 CALD1Q05682 793 aaKnown RBP18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 EIF4A2Q14240 407 aaKnown RBP18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 MBIPQ9NS73 344 aa18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 OVOS2A0A0J9YW53 1432 aa18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 OVOS2Q6IE36 1432 aa18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 ELL2O00472 640 aaPredicted RBP18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 IPO8O15397 1037 aaKnown RBP18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 GNAI1P63096 354 aa18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 IFT57Q9NWB7 429 aa18.93■□□□□ 0.62
CLCNKA-201ENST00000331433 VAMP4O75379 141 aa18.92■□□□□ 0.62
CLCNKA-201ENST00000331433 SEC24BO95487 1268 aa18.92■□□□□ 0.62
CLCNKA-201ENST00000331433 DCTN1Q14203 1278 aa18.92■□□□□ 0.62
CLCNKA-201ENST00000331433 TBX22Q9Y458 520 aa18.92■□□□□ 0.62
CLCNKA-201ENST00000331433 ZNF853P0CG23 659 aa18.91■□□□□ 0.62
CLCNKA-201ENST00000331433 SULT6B1Q6IMI4 303 aa18.91■□□□□ 0.62
CLCNKA-201ENST00000331433 HSP90AB2PQ58FF8 381 aa18.9■□□□□ 0.62
CLCNKA-201ENST00000331433 LMOD3Q0VAK6 560 aa18.9■□□□□ 0.62
CLCNKA-201ENST00000331433 THEMISQ8N1K5 641 aaPredicted RBP18.9■□□□□ 0.62
CLCNKA-201ENST00000331433 ZBTB40Q9NUA8 1239 aa18.9■□□□□ 0.62
CLCNKA-201ENST00000331433 ZNF428Q96B54 188 aa18.89■□□□□ 0.61
CLCNKA-201ENST00000331433 USP19O94966 1318 aa18.89■□□□□ 0.61
CLCNKA-201ENST00000331433 CFAP44Q96MT7 982 aa18.89■□□□□ 0.61
CLCNKA-201ENST00000331433 PTCH1Q13635 1447 aa18.88■□□□□ 0.61
CLCNKA-201ENST00000331433 PEAK1Q9H792 1746 aa18.88■□□□□ 0.61
CLCNKA-201ENST00000331433 HDAC1Q13547 482 aaPredicted RBP18.88■□□□□ 0.61
CLCNKA-201ENST00000331433 MRPL50Q8N5N7 158 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-201ENST00000331433 SSH2Q76I76 1423 aa18.87■□□□□ 0.61
CLCNKA-201ENST00000331433 NALCNQ8IZF0 1738 aa18.87■□□□□ 0.61
CLCNKA-201ENST00000331433 BRPF1P55201 1214 aaPredicted RBP18.87■□□□□ 0.61
CLCNKA-201ENST00000331433 C8orf58Q8NAV2 365 aa18.87■□□□□ 0.61
CLCNKA-201ENST00000331433 RGPD8O14715 1765 aaPredicted RBP18.87■□□□□ 0.61
CLCNKA-201ENST00000331433 TWISTNBQ3B726 338 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 RTL5Q5HYW3 569 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 DAXXQ9UER7 740 aaPredicted RBP18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 NGDNQ8NEJ9 315 aaKnown RBP18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 USP31Q70CQ4 1352 aa18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 DIP2AQ14689 1571 aa18.86■□□□□ 0.61
CLCNKA-201ENST00000331433 MAP3K19Q56UN5 1328 aa18.84■□□□□ 0.61
CLCNKA-201ENST00000331433 KCNA6P17658 529 aa18.83■□□□□ 0.6
CLCNKA-201ENST00000331433 TTC21AQ8NDW8 1320 aa18.83■□□□□ 0.6
CLCNKA-201ENST00000331433 MCM10Q7L590 875 aa18.82■□□□□ 0.6
CLCNKA-201ENST00000331433 SMC5Q8IY18 1101 aa18.82■□□□□ 0.6
CLCNKA-201ENST00000331433 DEKP35659 375 aaKnown RBP18.82■□□□□ 0.6
CLCNKA-201ENST00000331433 ARHGAP45Q92619 1136 aa18.81■□□□□ 0.6
CLCNKA-201ENST00000331433 XRN1Q8IZH2 1706 aaKnown RBP18.81■□□□□ 0.6
CLCNKA-201ENST00000331433 C1orf115Q9H7X2 142 aa18.8■□□□□ 0.6
CLCNKA-201ENST00000331433 RGPD1P0DJD0 1748 aa18.8■□□□□ 0.6
CLCNKA-201ENST00000331433 ZBTB7BO15156 539 aaPredicted RBP18.8■□□□□ 0.6
CLCNKA-201ENST00000331433 KRT24Q2M2I5 525 aa18.8■□□□□ 0.6
CLCNKA-201ENST00000331433 PIK3R4Q99570 1358 aa18.79■□□□□ 0.6
CLCNKA-201ENST00000331433 ABCC4O15439 1325 aa18.78■□□□□ 0.6
CLCNKA-201ENST00000331433 NUTM2GQ5VZR2 741 aa18.78■□□□□ 0.6
CLCNKA-201ENST00000331433 PIK3C2AO00443 1686 aa18.78■□□□□ 0.6
CLCNKA-201ENST00000331433 FLT4P35916 1363 aa18.77■□□□□ 0.6
CLCNKA-201ENST00000331433 SBNO1A3KN83 1393 aa18.77■□□□□ 0.6
CLCNKA-201ENST00000331433 FMN2Q9NZ56 1722 aa18.77■□□□□ 0.59
CLCNKA-201ENST00000331433 FOXO3O43524 673 aa18.77■□□□□ 0.59
CLCNKA-201ENST00000331433 AMPHP49418 695 aa18.77■□□□□ 0.59
CLCNKA-201ENST00000331433 CEP170BQ9Y4F5 1589 aaPredicted RBP18.77■□□□□ 0.59
CLCNKA-201ENST00000331433 NLRP6P59044 892 aa18.76■□□□□ 0.59
CLCNKA-201ENST00000331433 ARHGEF10O15013 1369 aa18.76■□□□□ 0.59
CLCNKA-201ENST00000331433 CHL1O00533 1208 aa18.76■□□□□ 0.59
CLCNKA-201ENST00000331433 RIMS1Q86UR5 1692 aaKnown RBP18.76■□□□□ 0.59
CLCNKA-201ENST00000331433 NUCB1Q02818 461 aa18.75■□□□□ 0.59
CLCNKA-201ENST00000331433 LNPKQ9C0E8 428 aa18.75■□□□□ 0.59
CLCNKA-201ENST00000331433 UPF2Q9HAU5 1272 aaKnown RBP18.75■□□□□ 0.59
CLCNKA-201ENST00000331433 MTHFSDQ2M296 383 aaKnown RBP18.74■□□□□ 0.59
CLCNKA-201ENST00000331433 TBC1D32Q96NH3 1257 aa18.74■□□□□ 0.59
CLCNKA-201ENST00000331433 API5Q9BZZ5 524 aaKnown RBP18.74■□□□□ 0.59
CLCNKA-201ENST00000331433 EYA1Q99502 592 aa18.74■□□□□ 0.59
CLCNKA-201ENST00000331433 ANKARQ7Z5J8 1434 aa18.73■□□□□ 0.59
CLCNKA-201ENST00000331433 RBM33Q96EV2 1170 aaKnown RBP18.73■□□□□ 0.59
CLCNKA-201ENST00000331433 MIS18AQ9NYP9 233 aa18.73■□□□□ 0.59
CLCNKA-201ENST00000331433 USP35Q9P2H5 1018 aa18.73■□□□□ 0.59
CLCNKA-201ENST00000331433 CHD1LQ86WJ1 897 aa18.72■□□□□ 0.59
CLCNKA-201ENST00000331433 SIRT2Q8IXJ6 389 aa18.72■□□□□ 0.59
CLCNKA-201ENST00000331433 CHMP4BQ9H444 224 aaKnown RBP18.72■□□□□ 0.59
CLCNKA-201ENST00000331433 CRB1P82279 1406 aa18.72■□□□□ 0.59
CLCNKA-201ENST00000331433 KDRP35968 1356 aa18.71■□□□□ 0.59
CLCNKA-201ENST00000331433 IGSF1Q8N6C5 1336 aa18.71■□□□□ 0.59
CLCNKA-201ENST00000331433 NFKBIBQ15653 356 aa18.71■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms