RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 POLKQ9UBT6 870 aa20.46■□□□□ 0.87
USHBP1-202ENST00000324554 ATF7IPQ6VMQ6 1270 aa20.44■□□□□ 0.86
USHBP1-202ENST00000324554 RSPH6AQ9H0K4 717 aa20.44■□□□□ 0.86
USHBP1-202ENST00000324554 NOB1Q9ULX3 412 aaKnown RBP20.43■□□□□ 0.86
USHBP1-202ENST00000324554 CPSF1Q10570 1443 aaKnown RBP20.43■□□□□ 0.86
USHBP1-202ENST00000324554 PRKAR2BP31323 418 aa20.42■□□□□ 0.86
USHBP1-202ENST00000324554 ACEP12821 1306 aa20.42■□□□□ 0.86
USHBP1-202ENST00000324554 DDX19BQ9UMR2 479 aa20.42■□□□□ 0.86
USHBP1-202ENST00000324554 MAP2P11137 1827 aaKnown RBP20.41■□□□□ 0.86
USHBP1-202ENST00000324554 EDC4Q6P2E9 1401 aaKnown RBP20.41■□□□□ 0.86
USHBP1-202ENST00000324554 ITPRIPQ8IWB1 547 aa20.41■□□□□ 0.86
USHBP1-202ENST00000324554 RTN4Q9NQC3 1192 aaKnown RBP20.41■□□□□ 0.86
USHBP1-202ENST00000324554 BRPF3Q9ULD4 1205 aa20.39■□□□□ 0.86
USHBP1-202ENST00000324554 KIF16BQ96L93 1317 aa20.39■□□□□ 0.86
USHBP1-202ENST00000324554 SETD1BQ9UPS6 1966 aaKnown RBP20.39■□□□□ 0.86
USHBP1-202ENST00000324554 HDAC1Q13547 482 aaPredicted RBP20.39■□□□□ 0.85
USHBP1-202ENST00000324554 TMEM57Q8N5G2 664 aa20.38■□□□□ 0.85
USHBP1-202ENST00000324554 EMILIN1Q9Y6C2 1016 aa20.38■□□□□ 0.85
USHBP1-202ENST00000324554 SOX12O15370 315 aa20.37■□□□□ 0.85
USHBP1-202ENST00000324554 ALDH1L2Q3SY69 923 aa20.37■□□□□ 0.85
USHBP1-202ENST00000324554 PHACTR3Q96KR7 559 aa20.37■□□□□ 0.85
USHBP1-202ENST00000324554 TBC1D32Q96NH3 1257 aa20.37■□□□□ 0.85
USHBP1-202ENST00000324554 HMOX1P09601 288 aa20.37■□□□□ 0.85
USHBP1-202ENST00000324554 RRS1Q15050 365 aaKnown RBP20.37■□□□□ 0.85
USHBP1-202ENST00000324554 BECN1Q14457 450 aa20.36■□□□□ 0.85
USHBP1-202ENST00000324554 CDK12Q9NYV4 1490 aaPredicted RBP20.36■□□□□ 0.85
USHBP1-202ENST00000324554 IPO8O15397 1037 aaKnown RBP20.36■□□□□ 0.85
USHBP1-202ENST00000324554 NFE2L2Q16236 605 aa20.36■□□□□ 0.85
USHBP1-202ENST00000324554 IL13P35225 146 aa20.35■□□□□ 0.85
USHBP1-202ENST00000324554 SLKQ9H2G2 1235 aaPredicted RBP20.35■□□□□ 0.85
USHBP1-202ENST00000324554 PTCH1Q13635 1447 aa20.35■□□□□ 0.85
USHBP1-202ENST00000324554 AATKQ6ZMQ8 1374 aa20.35■□□□□ 0.85
USHBP1-202ENST00000324554 COG3Q96JB2 828 aa20.35■□□□□ 0.85
USHBP1-202ENST00000324554 ZNF692Q9BU19 519 aaPredicted RBP20.35■□□□□ 0.85
USHBP1-202ENST00000324554 ZBTB40Q9NUA8 1239 aa20.35■□□□□ 0.85
USHBP1-202ENST00000324554 RGPD8O14715 1765 aaPredicted RBP20.34■□□□□ 0.85
USHBP1-202ENST00000324554 NGDNQ8NEJ9 315 aaKnown RBP20.34■□□□□ 0.85
USHBP1-202ENST00000324554 UPF2Q9HAU5 1272 aaKnown RBP20.34■□□□□ 0.85
USHBP1-202ENST00000324554 DIP2AQ14689 1571 aa20.34■□□□□ 0.85
USHBP1-202ENST00000324554 MON2Q7Z3U7 1717 aa20.34■□□□□ 0.85
USHBP1-202ENST00000324554 ZNF142P52746 1687 aaPredicted RBP20.33■□□□□ 0.85
USHBP1-202ENST00000324554 PLEKHG3A1L390 1219 aa20.33■□□□□ 0.84
USHBP1-202ENST00000324554 ZNF428Q96B54 188 aa20.33■□□□□ 0.84
USHBP1-202ENST00000324554 TTC21BQ7Z4L5 1316 aa20.32■□□□□ 0.84
USHBP1-202ENST00000324554 BRPF1P55201 1214 aaPredicted RBP20.32■□□□□ 0.84
USHBP1-202ENST00000324554 SMC5Q8IY18 1101 aa20.32■□□□□ 0.84
USHBP1-202ENST00000324554 THUMPD2Q9BTF0 503 aaKnown RBP20.32■□□□□ 0.84
USHBP1-202ENST00000324554 ANTXR1Q9H6X2 564 aa20.32■□□□□ 0.84
USHBP1-202ENST00000324554 XRN1Q8IZH2 1706 aaKnown RBP20.32■□□□□ 0.84
USHBP1-202ENST00000324554 TBC1D2Q9BYX2 928 aa20.31■□□□□ 0.84
USHBP1-202ENST00000324554 ITSN1Q15811 1721 aa20.31■□□□□ 0.84
USHBP1-202ENST00000324554 HSPA2P54652 639 aa20.3■□□□□ 0.84
USHBP1-202ENST00000324554 CALD1Q05682 793 aaKnown RBP20.3■□□□□ 0.84
USHBP1-202ENST00000324554 NUTM2GQ5VZR2 741 aa20.3■□□□□ 0.84
USHBP1-202ENST00000324554 C14orf37Q86TY3 774 aa20.3■□□□□ 0.84
USHBP1-202ENST00000324554 NPHP4O75161 1426 aaPredicted RBP20.29■□□□□ 0.84
USHBP1-202ENST00000324554 AKAP12Q02952 1782 aa20.29■□□□□ 0.84
USHBP1-202ENST00000324554 IFT57Q9NWB7 429 aa20.29■□□□□ 0.84
USHBP1-202ENST00000324554 VAMP4O75379 141 aa20.28■□□□□ 0.84
USHBP1-202ENST00000324554 ZNF853P0CG23 659 aa20.27■□□□□ 0.84
USHBP1-202ENST00000324554 GNAI1P63096 354 aa20.27■□□□□ 0.84
USHBP1-202ENST00000324554 PIK3R4Q99570 1358 aa20.27■□□□□ 0.84
USHBP1-202ENST00000324554 USP6P35125 1406 aa20.27■□□□□ 0.84
USHBP1-202ENST00000324554 TSPYL6Q8N831 410 aa20.27■□□□□ 0.84
USHBP1-202ENST00000324554 MRPL50Q8N5N7 158 aaKnown RBP20.26■□□□□ 0.83
USHBP1-202ENST00000324554 MBIPQ9NS73 344 aa20.26■□□□□ 0.83
USHBP1-202ENST00000324554 CHD2O14647 1828 aaKnown RBP20.26■□□□□ 0.83
USHBP1-202ENST00000324554 TOPAZ1Q8N9V7 1692 aa20.26■□□□□ 0.83
USHBP1-202ENST00000324554 DLG5Q8TDM6 1919 aa20.25■□□□□ 0.83
USHBP1-202ENST00000324554 ARHGAP45Q92619 1136 aa20.24■□□□□ 0.83
USHBP1-202ENST00000324554 PLEKHG5O94827 1062 aa20.24■□□□□ 0.83
USHBP1-202ENST00000324554 NUCB1Q02818 461 aa20.23■□□□□ 0.83
USHBP1-202ENST00000324554 LMOD3Q0VAK6 560 aa20.23■□□□□ 0.83
USHBP1-202ENST00000324554 ZBTB7BO15156 539 aaPredicted RBP20.23■□□□□ 0.83
USHBP1-202ENST00000324554 MFAP1P55081 439 aaKnown RBP20.23■□□□□ 0.83
USHBP1-202ENST00000324554 CFAP44Q96MT7 982 aa20.23■□□□□ 0.83
USHBP1-202ENST00000324554 C22orf23Q9BZE7 217 aa20.22■□□□□ 0.83
USHBP1-202ENST00000324554 ELL2O00472 640 aaPredicted RBP20.22■□□□□ 0.83
USHBP1-202ENST00000324554 ESCO1Q5FWF5 840 aa20.22■□□□□ 0.83
USHBP1-202ENST00000324554 NRKQ7Z2Y5 1582 aa20.21■□□□□ 0.83
USHBP1-202ENST00000324554 TWISTNBQ3B726 338 aaPredicted RBP20.21■□□□□ 0.83
USHBP1-202ENST00000324554 SPRYD3Q8NCJ5 442 aa20.21■□□□□ 0.83
USHBP1-202ENST00000324554 NALCNQ8IZF0 1738 aa20.21■□□□□ 0.83
USHBP1-202ENST00000324554 FAM83GA6ND36 823 aa20.21■□□□□ 0.83
USHBP1-202ENST00000324554 PROSER2Q86WR7 435 aaPredicted RBP20.2■□□□□ 0.82
USHBP1-202ENST00000324554 ABCC4O15439 1325 aa20.2■□□□□ 0.82
USHBP1-202ENST00000324554 XPCQ01831 940 aaPredicted RBP20.19■□□□□ 0.82
USHBP1-202ENST00000324554 C8orf58Q8NAV2 365 aa20.19■□□□□ 0.82
USHBP1-202ENST00000324554 LNPKQ9C0E8 428 aa20.19■□□□□ 0.82
USHBP1-202ENST00000324554 KDM4FA0A1W2PPD8 638 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 NLRP6P59044 892 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 HSP90AB2PQ58FF8 381 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 CHD1LQ86WJ1 897 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 CHMP4BQ9H444 224 aaKnown RBP20.18■□□□□ 0.82
USHBP1-202ENST00000324554 SSH2Q76I76 1423 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 PHF8Q9UPP1 1060 aa20.18■□□□□ 0.82
USHBP1-202ENST00000324554 DCTN1Q14203 1278 aa20.17■□□□□ 0.82
USHBP1-202ENST00000324554 ORAI2Q96SN7 254 aa20.17■□□□□ 0.82
USHBP1-202ENST00000324554 ABTB2Q8N961 1025 aa20.17■□□□□ 0.82
USHBP1-202ENST00000324554 C1orf115Q9H7X2 142 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms