RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 MBIPQ9NS73 344 aa12.99□□□□□ -0.33
COL3A1-202ENST00000317840 VAMP4O75379 141 aa12.99□□□□□ -0.33
COL3A1-202ENST00000317840 EFCAB6Q5THR3 1501 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 SSFA2P28290 1259 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 PSME1Q06323 249 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 MCTP1Q6DN14 999 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 ZNF428Q96B54 188 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 NOL8Q76FK4 1167 aaKnown RBP12.98□□□□□ -0.33
COL3A1-202ENST00000317840 ZBTB7BO15156 539 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-202ENST00000317840 ESCO1Q5FWF5 840 aa12.98□□□□□ -0.33
COL3A1-202ENST00000317840 CIZ1Q9ULV3 898 aaPredicted RBP12.98□□□□□ -0.33
COL3A1-202ENST00000317840 PTMSP20962 102 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 SULT6B1Q6IMI4 303 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 ABTB2Q8N961 1025 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 RBM25P49756 843 aaKnown RBP12.97□□□□□ -0.33
COL3A1-202ENST00000317840 GLIPR1L2Q4G1C9 344 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 ESPNB1AK53 854 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 C8orf58Q8NAV2 365 aa12.97□□□□□ -0.33
COL3A1-202ENST00000317840 MRPL50Q8N5N7 158 aaKnown RBP12.96□□□□□ -0.33
COL3A1-202ENST00000317840 MSNP26038 577 aaKnown RBP12.96□□□□□ -0.33
COL3A1-202ENST00000317840 NCBP3Q53F19 620 aaKnown RBP12.96□□□□□ -0.33
COL3A1-202ENST00000317840 TNRQ92752 1358 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 ST18O60284 1047 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 SNX21Q969T3 373 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 IQSEC2Q5JU85 1478 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 NEO1Q92859 1461 aa12.96□□□□□ -0.34
COL3A1-202ENST00000317840 IFT57Q9NWB7 429 aa12.95□□□□□ -0.34
COL3A1-202ENST00000317840 NLRP1Q9C000 1473 aa12.95□□□□□ -0.34
COL3A1-202ENST00000317840 NASPP49321 788 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-202ENST00000317840 CFAP44Q96MT7 982 aa12.95□□□□□ -0.34
COL3A1-202ENST00000317840 SMARCA5O60264 1052 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-202ENST00000317840 INTS3Q68E01 1043 aaKnown RBP12.95□□□□□ -0.34
COL3A1-202ENST00000317840 C16orf71Q8IYS4 520 aaPredicted RBP12.95□□□□□ -0.34
COL3A1-202ENST00000317840 CD2BP2O95400 341 aaKnown RBP12.94□□□□□ -0.34
COL3A1-202ENST00000317840 CSB-PGBD3P0DP91 1061 aa12.94□□□□□ -0.34
COL3A1-202ENST00000317840 FOXD4L6Q3SYB3 417 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-202ENST00000317840 CAVIN1Q6NZI2 390 aaKnown RBP12.94□□□□□ -0.34
COL3A1-202ENST00000317840 FOXD4L3Q6VB84 417 aaPredicted RBP12.94□□□□□ -0.34
COL3A1-202ENST00000317840 GAS2L2Q8NHY3 880 aa12.94□□□□□ -0.34
COL3A1-202ENST00000317840 MLH3Q9UHC1 1453 aa12.94□□□□□ -0.34
COL3A1-202ENST00000317840 KRT24Q2M2I5 525 aa12.94□□□□□ -0.34
COL3A1-202ENST00000317840 FSD2A1L4K1 749 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 RABEP1Q15276 862 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 LTKP29376 864 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 TRIM6-TRIM34B2RNG4 842 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 HMMRO75330 724 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 RAB3GAP1Q15042 981 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 MCM10Q7L590 875 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 MIS18AQ9NYP9 233 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 ARAP3Q8WWN8 1544 aa12.93□□□□□ -0.34
COL3A1-202ENST00000317840 HSP90AA2PQ14568 343 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-202ENST00000317840 ANKLE2Q86XL3 938 aa12.92□□□□□ -0.34
COL3A1-202ENST00000317840 ARHGAP45Q92619 1136 aa12.92□□□□□ -0.34
COL3A1-202ENST00000317840 KIAA1210Q9ULL0 1709 aa12.92□□□□□ -0.34
COL3A1-202ENST00000317840 NUCB2P80303 420 aa12.92□□□□□ -0.34
COL3A1-202ENST00000317840 ISY1Q9ULR0 285 aaKnown RBP12.92□□□□□ -0.34
COL3A1-202ENST00000317840 REC8O95072 547 aa12.92□□□□□ -0.34
COL3A1-202ENST00000317840 PROSER2Q86WR7 435 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-202ENST00000317840 PPRC1Q5VV67 1664 aaKnown RBP12.92□□□□□ -0.34
COL3A1-202ENST00000317840 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 CLCN1P35523 988 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 QRICH2Q9H0J4 1663 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 PPP6R1Q9UPN7 881 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 ADGRB3O60242 1522 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 YTHDC2Q9H6S0 1430 aaKnown RBP12.91□□□□□ -0.34
COL3A1-202ENST00000317840 PRPF40AO75400 957 aaKnown RBP12.91□□□□□ -0.34
COL3A1-202ENST00000317840 RILPL2Q969X0 211 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 INO80Q9ULG1 1556 aaPredicted RBP12.91□□□□□ -0.34
COL3A1-202ENST00000317840 ACEP12821 1306 aa12.91□□□□□ -0.34
COL3A1-202ENST00000317840 GAS2L3Q86XJ1 694 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 OTUD7AQ8TE49 926 aaPredicted RBP12.9□□□□□ -0.34
COL3A1-202ENST00000317840 BAG4O95429 457 aaKnown RBP12.9□□□□□ -0.34
COL3A1-202ENST00000317840 PTMAP06454 111 aaKnown RBP12.9□□□□□ -0.34
COL3A1-202ENST00000317840 PPIP5K1Q6PFW1 1433 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 ABCA9Q8IUA7 1624 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 NRXN1Q9ULB1 1477 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 AEBP1Q8IUX7 1158 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 SIRT2Q8IXJ6 389 aa12.9□□□□□ -0.34
COL3A1-202ENST00000317840 FOXO3O43524 673 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 PLEKHM2Q8IWE5 1019 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
COL3A1-202ENST00000317840 STK31Q9BXU1 1019 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 TULP4Q9NRJ4 1543 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 VWDEQ8N2E2 1590 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 DEPDC5O75140 1603 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 NEK4P51957 841 aa12.89□□□□□ -0.35
COL3A1-202ENST00000317840 EIF2S2P20042 333 aaKnown RBP12.88□□□□□ -0.35
COL3A1-202ENST00000317840 USHBP1Q8N6Y0 703 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 SETBP1Q9Y6X0 1596 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 MCCP23508 829 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 HSP90AB2PQ58FF8 381 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 TTC22Q5TAA0 569 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 TSPYL4Q9UJ04 414 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 MROH2AA6NES4 1674 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 ADGRB1O14514 1584 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 F6X3S4 739 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 ANO2Q9NQ90 1003 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 HECW2Q9P2P5 1572 aa12.88□□□□□ -0.35
COL3A1-202ENST00000317840 GSPT1P15170 499 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms