RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 PLXNC1O60486 1568 aa15.6■□□□□ 0.09
RETREG3-201ENST00000309428 OS9Q13438 667 aaPredicted RBP15.59■□□□□ 0.09
RETREG3-201ENST00000309428 ABTB2Q8N961 1025 aa15.59■□□□□ 0.09
RETREG3-201ENST00000309428 ACEP12821 1306 aa15.59■□□□□ 0.09
RETREG3-201ENST00000309428 YTHDC2Q9H6S0 1430 aaKnown RBP15.59■□□□□ 0.09
RETREG3-201ENST00000309428 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.58■□□□□ 0.09
RETREG3-201ENST00000309428 KDM5AP29375 1690 aaKnown RBP15.58■□□□□ 0.09
RETREG3-201ENST00000309428 SYNMO15061 1565 aa15.58■□□□□ 0.08
RETREG3-201ENST00000309428 ABCA6Q8N139 1617 aa15.58■□□□□ 0.08
RETREG3-201ENST00000309428 LARP6Q9BRS8 491 aaKnown RBP15.58■□□□□ 0.08
RETREG3-201ENST00000309428 CEP152O94986 1710 aa15.58■□□□□ 0.08
RETREG3-201ENST00000309428 IL1RAPL2Q9NP60 686 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 PRDM10Q9NQV6 1147 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 TSPOAP1O95153 1857 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 VAMP4O75379 141 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 HDGFP51858 240 aaKnown RBP15.57■□□□□ 0.08
RETREG3-201ENST00000309428 PLEKHF1Q96S99 279 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 STK31Q9BXU1 1019 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 ZNF330Q9Y3S2 320 aaPredicted RBP15.57■□□□□ 0.08
RETREG3-201ENST00000309428 SPHKAPQ2M3C7 1700 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 MEIS3Q99687 375 aa15.57■□□□□ 0.08
RETREG3-201ENST00000309428 EIF4A2Q14240 407 aaKnown RBP15.56■□□□□ 0.08
RETREG3-201ENST00000309428 AMOTL2Q9Y2J4 779 aa15.56■□□□□ 0.08
RETREG3-201ENST00000309428 PRPF40AO75400 957 aaKnown RBP15.56■□□□□ 0.08
RETREG3-201ENST00000309428 G2E3Q7L622 706 aa15.56■□□□□ 0.08
RETREG3-201ENST00000309428 PPIP5K1Q6PFW1 1433 aa15.55■□□□□ 0.08
RETREG3-201ENST00000309428 DDX54Q8TDD1 881 aaKnown RBP15.55■□□□□ 0.08
RETREG3-201ENST00000309428 METP08581 1390 aa15.55■□□□□ 0.08
RETREG3-201ENST00000309428 AIMP1Q12904 312 aaKnown RBP15.55■□□□□ 0.08
RETREG3-201ENST00000309428 CHAMP1Q96JM3 812 aa15.55■□□□□ 0.08
RETREG3-201ENST00000309428 TBC1D32Q96NH3 1257 aa15.55■□□□□ 0.08
RETREG3-201ENST00000309428 CHMP3Q9Y3E7 222 aa15.54■□□□□ 0.08
RETREG3-201ENST00000309428 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.54■□□□□ 0.08
RETREG3-201ENST00000309428 TNPO1Q92973 898 aaKnown RBP15.54■□□□□ 0.08
RETREG3-201ENST00000309428 ZBTB40Q9NUA8 1239 aa15.54■□□□□ 0.08
RETREG3-201ENST00000309428 USP19O94966 1318 aa15.54■□□□□ 0.08
RETREG3-201ENST00000309428 UHRF1BP1LA0JNW5 1464 aa15.54■□□□□ 0.08
RETREG3-201ENST00000309428 LTKP29376 864 aa15.54■□□□□ 0.08
RETREG3-201ENST00000309428 SSFA2P28290 1259 aa15.53■□□□□ 0.08
RETREG3-201ENST00000309428 NPC1L1Q9UHC9 1359 aa15.53■□□□□ 0.08
RETREG3-201ENST00000309428 RRP9O43818 475 aaKnown RBP15.53■□□□□ 0.08
RETREG3-201ENST00000309428 ESCO1Q5FWF5 840 aa15.53■□□□□ 0.08
RETREG3-201ENST00000309428 MAP3K4Q9Y6R4 1608 aa15.52■□□□□ 0.08
RETREG3-201ENST00000309428 PPRC1Q5VV67 1664 aaKnown RBP15.52■□□□□ 0.08
RETREG3-201ENST00000309428 KIAA2012Q0VF49 1180 aa15.52■□□□□ 0.08
RETREG3-201ENST00000309428 SKOR2Q2VWA4 1001 aaPredicted RBP15.52■□□□□ 0.08
RETREG3-201ENST00000309428 RNF17Q9BXT8 1623 aaKnown RBP15.52■□□□□ 0.08
RETREG3-201ENST00000309428 EFCAB6Q5THR3 1501 aa15.52■□□□□ 0.07
RETREG3-201ENST00000309428 LMOD3Q0VAK6 560 aa15.52■□□□□ 0.07
RETREG3-201ENST00000309428 RIMS2Q9UQ26 1411 aa15.51■□□□□ 0.07
RETREG3-201ENST00000309428 TBC1D9Q6ZT07 1266 aa15.51■□□□□ 0.07
RETREG3-201ENST00000309428 KIF1BO60333 1816 aa15.51■□□□□ 0.07
RETREG3-201ENST00000309428 DRC7Q8IY82 874 aa15.51■□□□□ 0.07
RETREG3-201ENST00000309428 MRPL50Q8N5N7 158 aaKnown RBP15.51■□□□□ 0.07
RETREG3-201ENST00000309428 API5Q9BZZ5 524 aaKnown RBP15.51■□□□□ 0.07
RETREG3-201ENST00000309428 TET3O43151 1660 aa15.51■□□□□ 0.07
RETREG3-201ENST00000309428 IL13P35225 146 aa15.5■□□□□ 0.07
RETREG3-201ENST00000309428 ANO2Q9NQ90 1003 aa15.5■□□□□ 0.07
RETREG3-201ENST00000309428 PIP4K2AP48426 406 aaPredicted RBP15.5■□□□□ 0.07
RETREG3-201ENST00000309428 PSME1Q06323 249 aa15.5■□□□□ 0.07
RETREG3-201ENST00000309428 JARID2Q92833 1246 aaPredicted RBP15.5■□□□□ 0.07
RETREG3-201ENST00000309428 CLASP1Q7Z460 1538 aa15.49■□□□□ 0.07
RETREG3-201ENST00000309428 ABCC11Q96J66 1382 aa15.49■□□□□ 0.07
RETREG3-201ENST00000309428 PRR36Q9H6K5 1346 aa15.49■□□□□ 0.07
RETREG3-201ENST00000309428 MTHFSDQ2M296 383 aaKnown RBP15.49■□□□□ 0.07
RETREG3-201ENST00000309428 CLCN1P35523 988 aa15.49■□□□□ 0.07
RETREG3-201ENST00000309428 CCDC27Q2M243 656 aa15.49■□□□□ 0.07
RETREG3-201ENST00000309428 CD2BP2O95400 341 aaKnown RBP15.48■□□□□ 0.07
RETREG3-201ENST00000309428 NUTM1Q86Y26 1132 aa15.48■□□□□ 0.07
RETREG3-201ENST00000309428 CFAP44Q96MT7 982 aa15.48■□□□□ 0.07
RETREG3-201ENST00000309428 ZC3H6P61129 1189 aaKnown RBP15.48■□□□□ 0.07
RETREG3-201ENST00000309428 ZBTB7BO15156 539 aaPredicted RBP15.48■□□□□ 0.07
RETREG3-201ENST00000309428 TTC21BQ7Z4L5 1316 aa15.47■□□□□ 0.07
RETREG3-201ENST00000309428 ST18O60284 1047 aa15.47■□□□□ 0.07
RETREG3-201ENST00000309428 CSB-PGBD3P0DP91 1061 aa15.47■□□□□ 0.07
RETREG3-201ENST00000309428 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.47■□□□□ 0.07
RETREG3-201ENST00000309428 LRRC59Q96AG4 307 aaKnown RBP15.47■□□□□ 0.07
RETREG3-201ENST00000309428 UPF3BQ9BZI7 483 aaKnown RBP15.47■□□□□ 0.07
RETREG3-201ENST00000309428 MROH2AA6NES4 1674 aa15.47■□□□□ 0.07
RETREG3-201ENST00000309428 SHROOM2Q13796 1616 aa15.47■□□□□ 0.07
RETREG3-201ENST00000309428 KIDINS220Q9ULH0 1771 aa15.46■□□□□ 0.07
RETREG3-201ENST00000309428 ABCC3O15438 1527 aa15.46■□□□□ 0.07
RETREG3-201ENST00000309428 MPRIPQ6WCQ1 1025 aa15.46■□□□□ 0.07
RETREG3-201ENST00000309428 ZMYM3Q14202 1370 aa15.46■□□□□ 0.07
RETREG3-201ENST00000309428 NUCB1Q02818 461 aa15.46■□□□□ 0.07
RETREG3-201ENST00000309428 UQCRHLA0A096LP55 91 aa15.46■□□□□ 0.06
RETREG3-201ENST00000309428 UQCRHP07919 91 aa15.46■□□□□ 0.06
RETREG3-201ENST00000309428 SIRT2Q8IXJ6 389 aa15.46■□□□□ 0.06
RETREG3-201ENST00000309428 MAP3K19Q56UN5 1328 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 KCNJ4P48050 445 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 IFT57Q9NWB7 429 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 TULP4Q9NRJ4 1543 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 RBM27Q9P2N5 1060 aaKnown RBP15.45■□□□□ 0.06
RETREG3-201ENST00000309428 SETD1BQ9UPS6 1966 aaKnown RBP15.45■□□□□ 0.06
RETREG3-201ENST00000309428 MYOM2P54296 1465 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 TEFQ10587 303 aa15.45■□□□□ 0.06
RETREG3-201ENST00000309428 CHAF1AQ13111 956 aaPredicted RBP15.45■□□□□ 0.06
RETREG3-201ENST00000309428 ZHX1Q9UKY1 873 aaPredicted RBP15.45■□□□□ 0.06
RETREG3-201ENST00000309428 HDGFL1Q5TGJ6 251 aa15.44■□□□□ 0.06
RETREG3-201ENST00000309428 SURF6O75683 361 aaKnown RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms