RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 XPCQ01831 940 aaPredicted RBP29.16■■■□□ 2.26
PDLIM2-202ENST00000308354 SULT6B1Q6IMI4 303 aa29.15■■■□□ 2.26
PDLIM2-202ENST00000308354 FOXO3O43524 673 aa29.14■■■□□ 2.26
PDLIM2-202ENST00000308354 NFE2L2Q16236 605 aa29.14■■■□□ 2.26
PDLIM2-202ENST00000308354 AMPHP49418 695 aa29.14■■■□□ 2.26
PDLIM2-202ENST00000308354 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.14■■■□□ 2.26
PDLIM2-202ENST00000308354 FANCIQ9NVI1 1328 aa29.14■■■□□ 2.25
PDLIM2-202ENST00000308354 THUMPD2Q9BTF0 503 aaKnown RBP29.12■■■□□ 2.25
PDLIM2-202ENST00000308354 C19orf44Q9H6X5 657 aa29.12■■■□□ 2.25
PDLIM2-202ENST00000308354 SBNO1A3KN83 1393 aa29.11■■■□□ 2.25
PDLIM2-202ENST00000308354 FLT4P35916 1363 aa29.1■■■□□ 2.25
PDLIM2-202ENST00000308354 BCL2L13Q9BXK5 485 aa29.1■■■□□ 2.25
PDLIM2-202ENST00000308354 TMEM94Q12767 1356 aa29.1■■■□□ 2.25
PDLIM2-202ENST00000308354 PLEKHG5O94827 1062 aa29.09■■■□□ 2.25
PDLIM2-202ENST00000308354 RARSP54136 660 aaKnown RBP29.09■■■□□ 2.25
PDLIM2-202ENST00000308354 MARF1Q9Y4F3 1742 aaKnown RBP29.09■■■□□ 2.25
PDLIM2-202ENST00000308354 EXOSC9Q06265 439 aaKnown RBP29.08■■■□□ 2.25
PDLIM2-202ENST00000308354 STRCP1A6NGW2 1772 aa29.08■■■□□ 2.25
PDLIM2-202ENST00000308354 LAS1LQ9Y4W2 734 aaKnown RBP29.07■■■□□ 2.24
PDLIM2-202ENST00000308354 IL16Q14005 1332 aa29.06■■■□□ 2.24
PDLIM2-202ENST00000308354 FRAT1Q92837 279 aaPredicted RBP29.06■■■□□ 2.24
PDLIM2-202ENST00000308354 LMTK3Q96Q04 1460 aa29.04■■■□□ 2.24
PDLIM2-202ENST00000308354 FAM83GA6ND36 823 aa29.04■■■□□ 2.24
PDLIM2-202ENST00000308354 CANXP27824 592 aaKnown RBP29.04■■■□□ 2.24
PDLIM2-202ENST00000308354 HOXC9P31274 260 aa29.04■■■□□ 2.24
PDLIM2-202ENST00000308354 C1orf167Q5SNV9 1468 aa29.03■■■□□ 2.24
PDLIM2-202ENST00000308354 LMOD2Q6P5Q4 547 aa29.03■■■□□ 2.24
PDLIM2-202ENST00000308354 ATF3P18847 181 aa29.02■■■□□ 2.24
PDLIM2-202ENST00000308354 DCTN1Q14203 1278 aa29.02■■■□□ 2.24
PDLIM2-202ENST00000308354 LTV1Q96GA3 475 aaPredicted RBP29.01■■■□□ 2.24
PDLIM2-202ENST00000308354 EYA1Q99502 592 aa29.01■■■□□ 2.23
PDLIM2-202ENST00000308354 RGPD1P0DJD0 1748 aa29■■■□□ 2.23
PDLIM2-202ENST00000308354 ZBTB7CA1YPR0 619 aa29■■■□□ 2.23
PDLIM2-202ENST00000308354 USP54Q70EL1 1684 aa28.98■■■□□ 2.23
PDLIM2-202ENST00000308354 KRT28Q7Z3Y7 464 aa28.98■■■□□ 2.23
PDLIM2-202ENST00000308354 PANK1Q8TE04 598 aa28.98■■■□□ 2.23
PDLIM2-202ENST00000308354 DLG5Q8TDM6 1919 aa28.97■■■□□ 2.23
PDLIM2-202ENST00000308354 DDX17Q92841 729 aaKnown RBP28.97■■■□□ 2.23
PDLIM2-202ENST00000308354 TNNQ9UQP3 1299 aa28.97■■■□□ 2.23
PDLIM2-202ENST00000308354 ARHGEF10O15013 1369 aa28.97■■■□□ 2.23
PDLIM2-202ENST00000308354 MST1RQ04912 1400 aa28.95■■■□□ 2.22
PDLIM2-202ENST00000308354 LMOD3Q0VAK6 560 aa28.94■■■□□ 2.22
PDLIM2-202ENST00000308354 IGSF1Q8N6C5 1336 aa28.94■■■□□ 2.22
PDLIM2-202ENST00000308354 MYT1Q01538 1121 aa28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 STRCQ7RTU9 1775 aa28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 CT47B1P0C2W7 299 aaPredicted RBP28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 CALD1Q05682 793 aaKnown RBP28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 PDE3AQ14432 1141 aa28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 COG6Q9Y2V7 657 aa28.93■■■□□ 2.22
PDLIM2-202ENST00000308354 KIF24Q5T7B8 1368 aa28.92■■■□□ 2.22
PDLIM2-202ENST00000308354 SSH1Q8WYL5 1049 aa28.92■■■□□ 2.22
PDLIM2-202ENST00000308354 MCM10Q7L590 875 aa28.92■■■□□ 2.22
PDLIM2-202ENST00000308354 SMC4Q9NTJ3 1288 aa28.92■■■□□ 2.22
PDLIM2-202ENST00000308354 NFAT5O94916 1531 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 KCNH5Q8NCM2 988 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 CLUAP1Q96AJ1 413 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 MBIPQ9NS73 344 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 IFT57Q9NWB7 429 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 KDRP35968 1356 aa28.91■■■□□ 2.22
PDLIM2-202ENST00000308354 GCP02774 474 aa28.9■■■□□ 2.22
PDLIM2-202ENST00000308354 GNAI1P63096 354 aa28.9■■■□□ 2.22
PDLIM2-202ENST00000308354 LTN1O94822 1766 aa28.9■■■□□ 2.22
PDLIM2-202ENST00000308354 RLBP1P12271 317 aa28.9■■■□□ 2.22
PDLIM2-202ENST00000308354 MTHFSDQ2M296 383 aaKnown RBP28.9■■■□□ 2.22
PDLIM2-202ENST00000308354 ZNF853P0CG23 659 aa28.89■■■□□ 2.22
PDLIM2-202ENST00000308354 CADPS2Q86UW7 1296 aa28.89■■■□□ 2.22
PDLIM2-202ENST00000308354 USHBP1Q8N6Y0 703 aa28.89■■■□□ 2.22
PDLIM2-202ENST00000308354 IP6K1Q92551 441 aa28.89■■■□□ 2.22
PDLIM2-202ENST00000308354 ZNF335Q9H4Z2 1342 aaPredicted RBP28.88■■■□□ 2.21
PDLIM2-202ENST00000308354 ELL2O00472 640 aaPredicted RBP28.88■■■□□ 2.21
PDLIM2-202ENST00000308354 CFAP44Q96MT7 982 aa28.88■■■□□ 2.21
PDLIM2-202ENST00000308354 NCOA3Q9Y6Q9 1424 aa28.87■■■□□ 2.21
PDLIM2-202ENST00000308354 MSH6P52701 1360 aa28.87■■■□□ 2.21
PDLIM2-202ENST00000308354 DCCP43146 1447 aa28.87■■■□□ 2.21
PDLIM2-202ENST00000308354 TSPYL6Q8N831 410 aa28.86■■■□□ 2.21
PDLIM2-202ENST00000308354 RTL1A6NKG5 1358 aa28.86■■■□□ 2.21
PDLIM2-202ENST00000308354 KIF1AQ12756 1690 aa28.86■■■□□ 2.21
PDLIM2-202ENST00000308354 TRPM3Q9HCF6 1732 aaPredicted RBP28.86■■■□□ 2.21
PDLIM2-202ENST00000308354 KDM2BQ8NHM5 1336 aa28.84■■■□□ 2.21
PDLIM2-202ENST00000308354 ZKSCAN2Q63HK3 967 aa28.83■■■□□ 2.21
PDLIM2-202ENST00000308354 TCERG1O14776 1098 aaKnown RBP28.82■■■□□ 2.2
PDLIM2-202ENST00000308354 ARHGEF25Q86VW2 580 aa28.82■■■□□ 2.2
PDLIM2-202ENST00000308354 NBPF6Q5VWK0 638 aa28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 SKAP1Q86WV1 359 aa28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 NBPF4Q96M43 638 aa28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 NOB1Q9ULX3 412 aaKnown RBP28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 VAMP4O75379 141 aa28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 C8orf58Q8NAV2 365 aa28.81■■■□□ 2.2
PDLIM2-202ENST00000308354 USP19O94966 1318 aa28.8■■■□□ 2.2
PDLIM2-202ENST00000308354 XIRP1Q702N8 1843 aaKnown RBP28.8■■■□□ 2.2
PDLIM2-202ENST00000308354 MSH5O43196 834 aa28.79■■■□□ 2.2
PDLIM2-202ENST00000308354 LRRC59Q96AG4 307 aaKnown RBP28.79■■■□□ 2.2
PDLIM2-202ENST00000308354 SLIT3O75094 1523 aa28.79■■■□□ 2.2
PDLIM2-202ENST00000308354 TRIM27P14373 513 aa28.78■■■□□ 2.2
PDLIM2-202ENST00000308354 ZC3H6P61129 1189 aaKnown RBP28.78■■■□□ 2.2
PDLIM2-202ENST00000308354 CENPQQ7L2Z9 268 aaPredicted RBP28.78■■■□□ 2.2
PDLIM2-202ENST00000308354 FTSJ3Q8IY81 847 aaKnown RBP28.78■■■□□ 2.2
PDLIM2-202ENST00000308354 RTF1Q92541 710 aaKnown RBP28.78■■■□□ 2.2
PDLIM2-202ENST00000308354 TWISTNBQ3B726 338 aaPredicted RBP28.77■■■□□ 2.2
PDLIM2-202ENST00000308354 GAS2L2Q8NHY3 880 aa28.77■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms