RNA–Protein interactions for RNA: ENST00000299162.9

FOXN4-201, Transcript of forkhead box N4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXN4, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4-201ENST00000299162 ARHGEF40Q8TER5 1519 aa12.8□□□□□ -0.36
FOXN4-201ENST00000299162 SLKQ9H2G2 1235 aaPredicted RBP12.8□□□□□ -0.36
FOXN4-201ENST00000299162 RWDD1Q9H446 243 aaPredicted RBP12.8□□□□□ -0.36
FOXN4-201ENST00000299162 DDRGK1Q96HY6 314 aa12.79□□□□□ -0.36
FOXN4-201ENST00000299162 NINLQ9Y2I6 1382 aa12.79□□□□□ -0.36
FOXN4-201ENST00000299162 PPP6R1Q9UPN7 881 aa12.79□□□□□ -0.36
FOXN4-201ENST00000299162 NFE2L2Q16236 605 aa12.78□□□□□ -0.36
FOXN4-201ENST00000299162 LMOD2Q6P5Q4 547 aa12.78□□□□□ -0.36
FOXN4-201ENST00000299162 NECTIN2Q92692 538 aa12.78□□□□□ -0.36
FOXN4-201ENST00000299162 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
FOXN4-201ENST00000299162 LNPKQ9C0E8 428 aa12.78□□□□□ -0.36
FOXN4-201ENST00000299162 NAP1L5Q96NT1 182 aaPredicted RBP12.78□□□□□ -0.36
FOXN4-201ENST00000299162 IQSEC2Q5JU85 1478 aa12.77□□□□□ -0.36
FOXN4-201ENST00000299162 IL13P35225 146 aa12.77□□□□□ -0.36
FOXN4-201ENST00000299162 MBIPQ9NS73 344 aa12.77□□□□□ -0.36
FOXN4-201ENST00000299162 FOXO3O43524 673 aa12.77□□□□□ -0.37
FOXN4-201ENST00000299162 TMEM2Q9UHN6 1383 aa12.77□□□□□ -0.37
FOXN4-201ENST00000299162 C8orf58Q8NAV2 365 aa12.77□□□□□ -0.37
FOXN4-201ENST00000299162 MFAP1P55081 439 aaKnown RBP12.76□□□□□ -0.37
FOXN4-201ENST00000299162 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
FOXN4-201ENST00000299162 AMPHP49418 695 aa12.76□□□□□ -0.37
FOXN4-201ENST00000299162 EIF4A2Q14240 407 aaKnown RBP12.75□□□□□ -0.37
FOXN4-201ENST00000299162 TWISTNBQ3B726 338 aaPredicted RBP12.75□□□□□ -0.37
FOXN4-201ENST00000299162 TTC21BQ7Z4L5 1316 aa12.75□□□□□ -0.37
FOXN4-201ENST00000299162 NLRP6P59044 892 aa12.75□□□□□ -0.37
FOXN4-201ENST00000299162 XPCQ01831 940 aaPredicted RBP12.75□□□□□ -0.37
FOXN4-201ENST00000299162 NLRP1Q9C000 1473 aa12.75□□□□□ -0.37
FOXN4-201ENST00000299162 IPO8O15397 1037 aaKnown RBP12.74□□□□□ -0.37
FOXN4-201ENST00000299162 PDIA4P13667 645 aaKnown RBP12.74□□□□□ -0.37
FOXN4-201ENST00000299162 DDX19BQ9UMR2 479 aa12.74□□□□□ -0.37
FOXN4-201ENST00000299162 CPS1P31327 1500 aa12.73□□□□□ -0.37
FOXN4-201ENST00000299162 KCNA6P17658 529 aa12.73□□□□□ -0.37
FOXN4-201ENST00000299162 USHBP1Q8N6Y0 703 aa12.73□□□□□ -0.37
FOXN4-201ENST00000299162 ANKRD45Q5TZF3 282 aa12.72□□□□□ -0.37
FOXN4-201ENST00000299162 VAMP4O75379 141 aa12.72□□□□□ -0.37
FOXN4-201ENST00000299162 GNAI1P63096 354 aa12.72□□□□□ -0.37
FOXN4-201ENST00000299162 SLC4A10Q6U841 1118 aa12.72□□□□□ -0.37
FOXN4-201ENST00000299162 ZNF692Q9BU19 519 aaPredicted RBP12.72□□□□□ -0.37
FOXN4-201ENST00000299162 UPF2Q9HAU5 1272 aaKnown RBP12.72□□□□□ -0.37
FOXN4-201ENST00000299162 EDC4Q6P2E9 1401 aaKnown RBP12.71□□□□□ -0.37
FOXN4-201ENST00000299162 COL3A1P02461 1466 aaPredicted RBP12.71□□□□□ -0.37
FOXN4-201ENST00000299162 LRRC7Q96NW7 1537 aa12.71□□□□□ -0.38
FOXN4-201ENST00000299162 KIF16BQ96L93 1317 aa12.71□□□□□ -0.38
FOXN4-201ENST00000299162 ABTB2Q8N961 1025 aa12.7□□□□□ -0.38
FOXN4-201ENST00000299162 PNPLA6Q8IY17 1366 aa12.7□□□□□ -0.38
FOXN4-201ENST00000299162 SPATA31D1Q6ZQQ2 1576 aa12.69□□□□□ -0.38
FOXN4-201ENST00000299162 ZNF428Q96B54 188 aa12.69□□□□□ -0.38
FOXN4-201ENST00000299162 MAP3K19Q56UN5 1328 aa12.69□□□□□ -0.38
FOXN4-201ENST00000299162 THEMISQ8N1K5 641 aaPredicted RBP12.69□□□□□ -0.38
FOXN4-201ENST00000299162 AGLP35573 1532 aa12.69□□□□□ -0.38
FOXN4-201ENST00000299162 RTF1Q92541 710 aaKnown RBP12.69□□□□□ -0.38
FOXN4-201ENST00000299162 MAP2P11137 1827 aaKnown RBP12.68□□□□□ -0.38
FOXN4-201ENST00000299162 ZBTB40Q9NUA8 1239 aa12.68□□□□□ -0.38
FOXN4-201ENST00000299162 CPSF1Q10570 1443 aaKnown RBP12.68□□□□□ -0.38
FOXN4-201ENST00000299162 MRPL50Q8N5N7 158 aaKnown RBP12.67□□□□□ -0.38
FOXN4-201ENST00000299162 F6X3S4 739 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 CALD1Q05682 793 aaKnown RBP12.67□□□□□ -0.38
FOXN4-201ENST00000299162 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 ATP7BP35670 1465 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 ADAMTS13Q76LX8 1427 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 FAM135BQ49AJ0 1406 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 IL16Q14005 1332 aa12.67□□□□□ -0.38
FOXN4-201ENST00000299162 USP32Q8NFA0 1604 aa12.66□□□□□ -0.38
FOXN4-201ENST00000299162 CT47B1P0C2W7 299 aaPredicted RBP12.66□□□□□ -0.38
FOXN4-201ENST00000299162 LMOD3Q0VAK6 560 aa12.66□□□□□ -0.38
FOXN4-201ENST00000299162 ESCO1Q5FWF5 840 aa12.66□□□□□ -0.38
FOXN4-201ENST00000299162 TSPYL4Q9UJ04 414 aa12.66□□□□□ -0.38
FOXN4-201ENST00000299162 PTPRUQ92729 1446 aa12.66□□□□□ -0.38
FOXN4-201ENST00000299162 HSP90AA2PQ14568 343 aaPredicted RBP12.66□□□□□ -0.38
FOXN4-201ENST00000299162 MTHFSDQ2M296 383 aaKnown RBP12.66□□□□□ -0.38
FOXN4-201ENST00000299162 SLC4A2P04920 1241 aa12.65□□□□□ -0.38
FOXN4-201ENST00000299162 USP19O94966 1318 aa12.65□□□□□ -0.38
FOXN4-201ENST00000299162 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
FOXN4-201ENST00000299162 EYA1Q99502 592 aa12.64□□□□□ -0.39
FOXN4-201ENST00000299162 RRAGDQ9NQL2 400 aaPredicted RBP12.64□□□□□ -0.39
FOXN4-201ENST00000299162 KIF13AQ9H1H9 1805 aa12.64□□□□□ -0.39
FOXN4-201ENST00000299162 ALDH1L2Q3SY69 923 aa12.64□□□□□ -0.39
FOXN4-201ENST00000299162 FAM43AQ8N2R8 423 aa12.63□□□□□ -0.39
FOXN4-201ENST00000299162 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
FOXN4-201ENST00000299162 NRXN3Q9Y4C0 1643 aa12.63□□□□□ -0.39
FOXN4-201ENST00000299162 CHD1LQ86WJ1 897 aa12.63□□□□□ -0.39
FOXN4-201ENST00000299162 SMARCA5O60264 1052 aaPredicted RBP12.62□□□□□ -0.39
FOXN4-201ENST00000299162 PSME1Q06323 249 aa12.62□□□□□ -0.39
FOXN4-201ENST00000299162 G2E3Q7L622 706 aa12.62□□□□□ -0.39
FOXN4-201ENST00000299162 C16orf71Q8IYS4 520 aaPredicted RBP12.62□□□□□ -0.39
FOXN4-201ENST00000299162 ARID3AQ99856 593 aa12.62□□□□□ -0.39
FOXN4-201ENST00000299162 PLEKHG3A1L390 1219 aa12.62□□□□□ -0.39
FOXN4-201ENST00000299162 SETD1BQ9UPS6 1966 aaKnown RBP12.62□□□□□ -0.39
FOXN4-201ENST00000299162 ADGRB2O60241 1585 aa12.62□□□□□ -0.39
FOXN4-201ENST00000299162 MED14O60244 1454 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 EIF2S2P20042 333 aaKnown RBP12.61□□□□□ -0.39
FOXN4-201ENST00000299162 BECN1Q14457 450 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 PLEKHG1Q9ULL1 1385 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 C22orf23Q9BZE7 217 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 USP6P35125 1406 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 TBX22Q9Y458 520 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 KIF20BQ96Q89 1820 aa12.61□□□□□ -0.39
FOXN4-201ENST00000299162 HDAC1Q13547 482 aaPredicted RBP12.6□□□□□ -0.39
FOXN4-201ENST00000299162 SIRT2Q8IXJ6 389 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms