RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 AMPHP49418 695 aa11.85□□□□□ -0.51
PRDM9-201ENST00000296682 POLKQ9UBT6 870 aa11.85□□□□□ -0.51
PRDM9-201ENST00000296682 AAMPQ13685 434 aa11.85□□□□□ -0.51
PRDM9-201ENST00000296682 PHRF1Q9P1Y6 1649 aaKnown RBP11.85□□□□□ -0.51
PRDM9-201ENST00000296682 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
PRDM9-201ENST00000296682 XPCQ01831 940 aaPredicted RBP11.84□□□□□ -0.51
PRDM9-201ENST00000296682 FAM161AQ3B820 660 aa11.84□□□□□ -0.51
PRDM9-201ENST00000296682 WDR63Q8IWG1 891 aa11.84□□□□□ -0.51
PRDM9-201ENST00000296682 PLEKHF1Q96S99 279 aa11.84□□□□□ -0.51
PRDM9-201ENST00000296682 SLKQ9H2G2 1235 aaPredicted RBP11.84□□□□□ -0.51
PRDM9-201ENST00000296682 PNNQ9H307 717 aaKnown RBP11.84□□□□□ -0.51
PRDM9-201ENST00000296682 CDK12Q9NYV4 1490 aaPredicted RBP11.84□□□□□ -0.51
PRDM9-201ENST00000296682 RIMS2Q9UQ26 1411 aa11.84□□□□□ -0.51
PRDM9-201ENST00000296682 AATKQ6ZMQ8 1374 aa11.83□□□□□ -0.52
PRDM9-201ENST00000296682 LTKP29376 864 aa11.83□□□□□ -0.52
PRDM9-201ENST00000296682 AEBP1Q8IUX7 1158 aa11.83□□□□□ -0.52
PRDM9-201ENST00000296682 RWDD1Q9H446 243 aaPredicted RBP11.83□□□□□ -0.52
PRDM9-201ENST00000296682 UPF2Q9HAU5 1272 aaKnown RBP11.83□□□□□ -0.52
PRDM9-201ENST00000296682 AMOTL2Q9Y2J4 779 aa11.83□□□□□ -0.52
PRDM9-201ENST00000296682 FER1L4A9Z1Z3 1794 aa11.83□□□□□ -0.52
PRDM9-201ENST00000296682 NLRP6P59044 892 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 SLC4A10Q6U841 1118 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 LRRC37A3O60309 1634 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 MCM10Q7L590 875 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 ZNF428Q96B54 188 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 ADAMTS13Q76LX8 1427 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 HSP90AB2PQ58FF8 381 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 PDZRN3Q9UPQ7 1066 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 METP08581 1390 aa11.82□□□□□ -0.52
PRDM9-201ENST00000296682 SSH2Q76I76 1423 aa11.81□□□□□ -0.52
PRDM9-201ENST00000296682 LNPKQ9C0E8 428 aa11.81□□□□□ -0.52
PRDM9-201ENST00000296682 DEKP35659 375 aaKnown RBP11.81□□□□□ -0.52
PRDM9-201ENST00000296682 MFAP1P55081 439 aaKnown RBP11.81□□□□□ -0.52
PRDM9-201ENST00000296682 PDE3AQ14432 1141 aa11.81□□□□□ -0.52
PRDM9-201ENST00000296682 KRT24Q2M2I5 525 aa11.81□□□□□ -0.52
PRDM9-201ENST00000296682 PEAK1Q9H792 1746 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 TMEM57Q8N5G2 664 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 TSPYL6Q8N831 410 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 EDC4Q6P2E9 1401 aaKnown RBP11.8□□□□□ -0.52
PRDM9-201ENST00000296682 IL16Q14005 1332 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 CT47B1P0C2W7 299 aaPredicted RBP11.8□□□□□ -0.52
PRDM9-201ENST00000296682 TRIM27P14373 513 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 TRIM35Q9UPQ4 493 aa11.8□□□□□ -0.52
PRDM9-201ENST00000296682 IPO8O15397 1037 aaKnown RBP11.8□□□□□ -0.52
PRDM9-201ENST00000296682 RTF1Q92541 710 aaKnown RBP11.8□□□□□ -0.52
PRDM9-201ENST00000296682 ACEP12821 1306 aa11.79□□□□□ -0.52
PRDM9-201ENST00000296682 PTCH1Q13635 1447 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 FCHSD2O94868 740 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 BRPF1P55201 1214 aaPredicted RBP11.78□□□□□ -0.52
PRDM9-201ENST00000296682 ANKRD45Q5TZF3 282 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 DDRGK1Q96HY6 314 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 ATF7IPQ6VMQ6 1270 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 ABTB2Q8N961 1025 aa11.78□□□□□ -0.52
PRDM9-201ENST00000296682 CHD2O14647 1828 aaKnown RBP11.77□□□□□ -0.52
PRDM9-201ENST00000296682 TNRQ92752 1358 aa11.77□□□□□ -0.52
PRDM9-201ENST00000296682 SEC24BO95487 1268 aa11.77□□□□□ -0.53
PRDM9-201ENST00000296682 MVPQ14764 893 aaKnown RBP11.77□□□□□ -0.53
PRDM9-201ENST00000296682 USHBP1Q8N6Y0 703 aa11.77□□□□□ -0.53
PRDM9-201ENST00000296682 PLEKHG1Q9ULL1 1385 aa11.77□□□□□ -0.53
PRDM9-201ENST00000296682 TWISTNBQ3B726 338 aaPredicted RBP11.77□□□□□ -0.53
PRDM9-201ENST00000296682 FOXO3O43524 673 aa11.76□□□□□ -0.53
PRDM9-201ENST00000296682 NFE2L2Q16236 605 aa11.76□□□□□ -0.53
PRDM9-201ENST00000296682 ESCO1Q5FWF5 840 aa11.75□□□□□ -0.53
PRDM9-201ENST00000296682 DDX19BQ9UMR2 479 aa11.75□□□□□ -0.53
PRDM9-201ENST00000296682 TMEM2Q9UHN6 1383 aa11.75□□□□□ -0.53
PRDM9-201ENST00000296682 THEMISQ8N1K5 641 aaPredicted RBP11.74□□□□□ -0.53
PRDM9-201ENST00000296682 C8orf58Q8NAV2 365 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 PIK3R4Q99570 1358 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 MBIPQ9NS73 344 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 PIK3C2AO00443 1686 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 OVOS2A0A0J9YW53 1432 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 HSP90AA1P07900 732 aaKnown RBP11.74□□□□□ -0.53
PRDM9-201ENST00000296682 GNAI1P63096 354 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 OVOS2Q6IE36 1432 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 ZNF692Q9BU19 519 aaPredicted RBP11.74□□□□□ -0.53
PRDM9-201ENST00000296682 FOXD4L1Q9NU39 408 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 TUBGCP6Q96RT7 1819 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 CAMTA1Q9Y6Y1 1673 aa11.74□□□□□ -0.53
PRDM9-201ENST00000296682 PSME1Q06323 249 aa11.73□□□□□ -0.53
PRDM9-201ENST00000296682 RSPH6AQ9H0K4 717 aa11.73□□□□□ -0.53
PRDM9-201ENST00000296682 RGPD8O14715 1765 aaPredicted RBP11.73□□□□□ -0.53
PRDM9-201ENST00000296682 KCNA6P17658 529 aa11.73□□□□□ -0.53
PRDM9-201ENST00000296682 PRR36Q9H6K5 1346 aa11.73□□□□□ -0.53
PRDM9-201ENST00000296682 EIF2S2P20042 333 aaKnown RBP11.73□□□□□ -0.53
PRDM9-201ENST00000296682 C8orf34Q49A92 452 aa11.73□□□□□ -0.53
PRDM9-201ENST00000296682 ADAMTSL3P82987 1691 aa11.72□□□□□ -0.53
PRDM9-201ENST00000296682 TTC21BQ7Z4L5 1316 aa11.72□□□□□ -0.53
PRDM9-201ENST00000296682 USP31Q70CQ4 1352 aa11.72□□□□□ -0.53
PRDM9-201ENST00000296682 CALD1Q05682 793 aaKnown RBP11.72□□□□□ -0.53
PRDM9-201ENST00000296682 EIF4A2Q14240 407 aaKnown RBP11.72□□□□□ -0.53
PRDM9-201ENST00000296682 TSPYL4Q9UJ04 414 aa11.72□□□□□ -0.53
PRDM9-201ENST00000296682 RTN4Q9NQC3 1192 aaKnown RBP11.71□□□□□ -0.53
PRDM9-201ENST00000296682 LMTK3Q96Q04 1460 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 SLC4A2P04920 1241 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 IL13P35225 146 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 F6X3S4 739 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 LMOD3Q0VAK6 560 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 CACNA1FO60840 1977 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 ROBO2Q9HCK4 1378 aa11.7□□□□□ -0.54
PRDM9-201ENST00000296682 BECN1Q14457 450 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms