RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 IRX6P78412 446 aaPredicted RBP20.37■□□□□ 0.85
LSM6-201ENST00000296581 EIF4A2Q14240 407 aaKnown RBP20.37■□□□□ 0.85
LSM6-201ENST00000296581 CADPS2Q86UW7 1296 aa20.37■□□□□ 0.85
LSM6-201ENST00000296581 MSH6P52701 1360 aa20.37■□□□□ 0.85
LSM6-201ENST00000296581 FOXO3O43524 673 aa20.36■□□□□ 0.85
LSM6-201ENST00000296581 PRKAR2BP31323 418 aa20.36■□□□□ 0.85
LSM6-201ENST00000296581 SOX12O15370 315 aa20.36■□□□□ 0.85
LSM6-201ENST00000296581 NUTM2GQ5VZR2 741 aa20.36■□□□□ 0.85
LSM6-201ENST00000296581 HSP90AB2PQ58FF8 381 aa20.35■□□□□ 0.85
LSM6-201ENST00000296581 NFAT5O94916 1531 aa20.35■□□□□ 0.85
LSM6-201ENST00000296581 ZNF335Q9H4Z2 1342 aaPredicted RBP20.34■□□□□ 0.85
LSM6-201ENST00000296581 HMOX1P09601 288 aa20.33■□□□□ 0.85
LSM6-201ENST00000296581 RRP1P56182 461 aaKnown RBP20.33■□□□□ 0.85
LSM6-201ENST00000296581 TRIM35Q9UPQ4 493 aa20.33■□□□□ 0.84
LSM6-201ENST00000296581 LTN1O94822 1766 aa20.32■□□□□ 0.84
LSM6-201ENST00000296581 SLIT3O75094 1523 aa20.32■□□□□ 0.84
LSM6-201ENST00000296581 NEFMP07197 916 aa20.32■□□□□ 0.84
LSM6-201ENST00000296581 KRT28Q7Z3Y7 464 aa20.32■□□□□ 0.84
LSM6-201ENST00000296581 ALS2Q96Q42 1657 aa20.31■□□□□ 0.84
LSM6-201ENST00000296581 RTL1A6NKG5 1358 aa20.31■□□□□ 0.84
LSM6-201ENST00000296581 PHRF1Q9P1Y6 1649 aaKnown RBP20.31■□□□□ 0.84
LSM6-201ENST00000296581 AMPHP49418 695 aa20.31■□□□□ 0.84
LSM6-201ENST00000296581 RIPK4P57078 832 aa20.3■□□□□ 0.84
LSM6-201ENST00000296581 PHACTR3Q96KR7 559 aa20.3■□□□□ 0.84
LSM6-201ENST00000296581 ARHGEF10O15013 1369 aa20.3■□□□□ 0.84
LSM6-201ENST00000296581 XPCQ01831 940 aaPredicted RBP20.29■□□□□ 0.84
LSM6-201ENST00000296581 KCNH5Q8NCM2 988 aa20.29■□□□□ 0.84
LSM6-201ENST00000296581 HOXC9P31274 260 aa20.29■□□□□ 0.84
LSM6-201ENST00000296581 NFE2L2Q16236 605 aa20.29■□□□□ 0.84
LSM6-201ENST00000296581 USP19O94966 1318 aa20.28■□□□□ 0.84
LSM6-201ENST00000296581 IL16Q14005 1332 aa20.28■□□□□ 0.84
LSM6-201ENST00000296581 DLG5Q8TDM6 1919 aa20.27■□□□□ 0.84
LSM6-201ENST00000296581 SULT6B1Q6IMI4 303 aa20.27■□□□□ 0.83
LSM6-201ENST00000296581 AEBP1Q8IUX7 1158 aa20.26■□□□□ 0.83
LSM6-201ENST00000296581 MYH16Q9H6N6 1097 aa20.26■□□□□ 0.83
LSM6-201ENST00000296581 KDRP35968 1356 aa20.25■□□□□ 0.83
LSM6-201ENST00000296581 NPHP3Q7Z494 1330 aa20.25■□□□□ 0.83
LSM6-201ENST00000296581 IGSF1Q8N6C5 1336 aa20.25■□□□□ 0.83
LSM6-201ENST00000296581 PPP4R2Q9NY27 417 aa20.25■□□□□ 0.83
LSM6-201ENST00000296581 PXDNQ92626 1479 aa20.24■□□□□ 0.83
LSM6-201ENST00000296581 IP6K1Q92551 441 aa20.24■□□□□ 0.83
LSM6-201ENST00000296581 GCP02774 474 aa20.23■□□□□ 0.83
LSM6-201ENST00000296581 EYA1Q99502 592 aa20.23■□□□□ 0.83
LSM6-201ENST00000296581 MED1Q15648 1581 aaPredicted RBP20.22■□□□□ 0.83
LSM6-201ENST00000296581 LMOD3Q0VAK6 560 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 BRINP3Q76B58 766 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 TNS3Q68CZ2 1445 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 FANCIQ9NVI1 1328 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 LMOD2Q6P5Q4 547 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 ARHGEF25Q86VW2 580 aa20.2■□□□□ 0.82
LSM6-201ENST00000296581 DDX17Q92841 729 aaKnown RBP20.2■□□□□ 0.82
LSM6-201ENST00000296581 SLAIN2Q9P270 581 aa20.19■□□□□ 0.82
LSM6-201ENST00000296581 CALD1Q05682 793 aaKnown RBP20.18■□□□□ 0.82
LSM6-201ENST00000296581 CRYBG1Q9Y4K1 1723 aa20.17■□□□□ 0.82
LSM6-201ENST00000296581 PLIN1O60240 522 aa20.17■□□□□ 0.82
LSM6-201ENST00000296581 CT47B1P0C2W7 299 aaPredicted RBP20.16■□□□□ 0.82
LSM6-201ENST00000296581 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.16■□□□□ 0.82
LSM6-201ENST00000296581 SPATA31A3Q5VYP0 1347 aa20.16■□□□□ 0.82
LSM6-201ENST00000296581 TSR2Q969E8 191 aaKnown RBP20.16■□□□□ 0.82
LSM6-201ENST00000296581 BCAR3O75815 825 aa20.14■□□□□ 0.81
LSM6-201ENST00000296581 RARSP54136 660 aaKnown RBP20.14■□□□□ 0.81
LSM6-201ENST00000296581 LTV1Q96GA3 475 aaPredicted RBP20.14■□□□□ 0.81
LSM6-201ENST00000296581 ZNF853P0CG23 659 aa20.13■□□□□ 0.81
LSM6-201ENST00000296581 IFT57Q9NWB7 429 aa20.13■□□□□ 0.81
LSM6-201ENST00000296581 SOS2Q07890 1332 aaPredicted RBP20.13■□□□□ 0.81
LSM6-201ENST00000296581 EXOC6Q8TAG9 804 aa20.13■□□□□ 0.81
LSM6-201ENST00000296581 THUMPD2Q9BTF0 503 aaKnown RBP20.13■□□□□ 0.81
LSM6-201ENST00000296581 RGPD2P0DJD1 1756 aa20.12■□□□□ 0.81
LSM6-201ENST00000296581 GNAI1P63096 354 aa20.12■□□□□ 0.81
LSM6-201ENST00000296581 EXOSC9Q06265 439 aaKnown RBP20.12■□□□□ 0.81
LSM6-201ENST00000296581 CAMTA1Q9Y6Y1 1673 aa20.12■□□□□ 0.81
LSM6-201ENST00000296581 NCAPD2Q15021 1401 aa20.12■□□□□ 0.81
LSM6-201ENST00000296581 NHSL1Q5SYE7 1610 aa20.12■□□□□ 0.81
LSM6-201ENST00000296581 MTHFSDQ2M296 383 aaKnown RBP20.11■□□□□ 0.81
LSM6-201ENST00000296581 ABCC6O95255 1503 aa20.11■□□□□ 0.81
LSM6-201ENST00000296581 COL18A1P39060 1754 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 ZBTB7CA1YPR0 619 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 FAM83GA6ND36 823 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 GAS2L2Q8NHY3 880 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 RBM19Q9Y4C8 960 aaKnown RBP20.1■□□□□ 0.81
LSM6-201ENST00000296581 RGPD5Q99666 1765 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 LTBP4Q8N2S1 1624 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 C20orf194Q5TEA3 1177 aa20.1■□□□□ 0.81
LSM6-201ENST00000296581 NBPF6Q5VWK0 638 aa20.09■□□□□ 0.81
LSM6-201ENST00000296581 B4GALNT3Q6L9W6 998 aa20.09■□□□□ 0.81
LSM6-201ENST00000296581 NBPF4Q96M43 638 aa20.09■□□□□ 0.81
LSM6-201ENST00000296581 CFAP44Q96MT7 982 aa20.09■□□□□ 0.81
LSM6-201ENST00000296581 PLEKHG5O94827 1062 aa20.09■□□□□ 0.81
LSM6-201ENST00000296581 CRBNQ96SW2 442 aa20.08■□□□□ 0.81
LSM6-201ENST00000296581 DCTN1Q14203 1278 aa20.07■□□□□ 0.8
LSM6-201ENST00000296581 AXIN2Q9Y2T1 843 aa20.07■□□□□ 0.8
LSM6-201ENST00000296581 ANKRD24Q8TF21 1146 aa20.07■□□□□ 0.8
LSM6-201ENST00000296581 LMO7Q8WWI1 1683 aa20.07■□□□□ 0.8
LSM6-201ENST00000296581 ZC3H6P61129 1189 aaKnown RBP20.06■□□□□ 0.8
LSM6-201ENST00000296581 ANO8Q9HCE9 1232 aaPredicted RBP20.06■□□□□ 0.8
LSM6-201ENST00000296581 LAS1LQ9Y4W2 734 aaKnown RBP20.06■□□□□ 0.8
LSM6-201ENST00000296581 CPDO75976 1380 aa20.06■□□□□ 0.8
LSM6-201ENST00000296581 HTATSF1O43719 755 aaKnown RBP20.06■□□□□ 0.8
LSM6-201ENST00000296581 USHBP1Q8N6Y0 703 aa20.06■□□□□ 0.8
LSM6-201ENST00000296581 MBIPQ9NS73 344 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms