RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 VIRMAQ69YN4 1812 aaKnown RBP30.69■■■□□ 2.5
TRIM54-201ENST00000296098 CALD1Q05682 793 aaKnown RBP30.69■■■□□ 2.5
TRIM54-201ENST00000296098 THEMISQ8N1K5 641 aaPredicted RBP30.69■■■□□ 2.5
TRIM54-201ENST00000296098 XRN1Q8IZH2 1706 aaKnown RBP30.68■■■□□ 2.5
TRIM54-201ENST00000296098 PCDHB15Q9Y5E8 787 aa30.68■■■□□ 2.5
TRIM54-201ENST00000296098 NUTM2FA1L443 756 aa30.67■■■□□ 2.5
TRIM54-201ENST00000296098 DLG5Q8TDM6 1919 aa30.67■■■□□ 2.5
TRIM54-201ENST00000296098 TRIM27P14373 513 aa30.66■■■□□ 2.5
TRIM54-201ENST00000296098 KIF16BQ96L93 1317 aa30.66■■■□□ 2.5
TRIM54-201ENST00000296098 RIMS1Q86UR5 1692 aaKnown RBP30.65■■■□□ 2.5
TRIM54-201ENST00000296098 ATF7IPQ6VMQ6 1270 aa30.64■■■□□ 2.5
TRIM54-201ENST00000296098 ALDH1L2Q3SY69 923 aa30.64■■■□□ 2.5
TRIM54-201ENST00000296098 LMOD3Q0VAK6 560 aa30.63■■■□□ 2.49
TRIM54-201ENST00000296098 SSH2Q76I76 1423 aa30.62■■■□□ 2.49
TRIM54-201ENST00000296098 RWDD1Q9H446 243 aaPredicted RBP30.61■■■□□ 2.49
TRIM54-201ENST00000296098 NOB1Q9ULX3 412 aaKnown RBP30.61■■■□□ 2.49
TRIM54-201ENST00000296098 CEP170BQ9Y4F5 1589 aaPredicted RBP30.61■■■□□ 2.49
TRIM54-201ENST00000296098 LAS1LQ9Y4W2 734 aaKnown RBP30.61■■■□□ 2.49
TRIM54-201ENST00000296098 PEAK1Q9H792 1746 aa30.61■■■□□ 2.49
TRIM54-201ENST00000296098 ZNF428Q96B54 188 aa30.61■■■□□ 2.49
TRIM54-201ENST00000296098 DDRGK1Q96HY6 314 aa30.61■■■□□ 2.49
TRIM54-201ENST00000296098 IFT57Q9NWB7 429 aa30.61■■■□□ 2.49
TRIM54-201ENST00000296098 USP31Q70CQ4 1352 aa30.6■■■□□ 2.49
TRIM54-201ENST00000296098 GNAI1P63096 354 aa30.59■■■□□ 2.49
TRIM54-201ENST00000296098 THUMPD2Q9BTF0 503 aaKnown RBP30.59■■■□□ 2.49
TRIM54-201ENST00000296098 DDX19BQ9UMR2 479 aa30.59■■■□□ 2.49
TRIM54-201ENST00000296098 IPO8O15397 1037 aaKnown RBP30.59■■■□□ 2.49
TRIM54-201ENST00000296098 TTC21AQ8NDW8 1320 aa30.58■■■□□ 2.49
TRIM54-201ENST00000296098 RGPD8O14715 1765 aaPredicted RBP30.58■■■□□ 2.49
TRIM54-201ENST00000296098 ITPRIPQ8IWB1 547 aa30.57■■■□□ 2.49
TRIM54-201ENST00000296098 TRHP20396 242 aaPredicted RBP30.57■■■□□ 2.48
TRIM54-201ENST00000296098 EIF4A2Q14240 407 aaKnown RBP30.57■■■□□ 2.48
TRIM54-201ENST00000296098 RGPD1P0DJD0 1748 aa30.56■■■□□ 2.48
TRIM54-201ENST00000296098 FMN2Q9NZ56 1722 aa30.55■■■□□ 2.48
TRIM54-201ENST00000296098 ZNF853P0CG23 659 aa30.55■■■□□ 2.48
TRIM54-201ENST00000296098 BRPF1P55201 1214 aaPredicted RBP30.54■■■□□ 2.48
TRIM54-201ENST00000296098 PIK3R4Q99570 1358 aa30.52■■■□□ 2.48
TRIM54-201ENST00000296098 TMEM57Q8N5G2 664 aa30.52■■■□□ 2.48
TRIM54-201ENST00000296098 MBIPQ9NS73 344 aa30.52■■■□□ 2.48
TRIM54-201ENST00000296098 ANKARQ7Z5J8 1434 aa30.52■■■□□ 2.48
TRIM54-201ENST00000296098 PDZRN3Q9UPQ7 1066 aa30.51■■■□□ 2.47
TRIM54-201ENST00000296098 PIK3C2AO00443 1686 aa30.5■■■□□ 2.47
TRIM54-201ENST00000296098 CFAP44Q96MT7 982 aa30.5■■■□□ 2.47
TRIM54-201ENST00000296098 SULT6B1Q6IMI4 303 aa30.49■■■□□ 2.47
TRIM54-201ENST00000296098 AEBP1Q8IUX7 1158 aa30.49■■■□□ 2.47
TRIM54-201ENST00000296098 VAMP4O75379 141 aa30.49■■■□□ 2.47
TRIM54-201ENST00000296098 NGDNQ8NEJ9 315 aaKnown RBP30.49■■■□□ 2.47
TRIM54-201ENST00000296098 HDAC1Q13547 482 aaPredicted RBP30.47■■■□□ 2.47
TRIM54-201ENST00000296098 ZNF142P52746 1687 aaPredicted RBP30.46■■■□□ 2.47
TRIM54-201ENST00000296098 HSP90AB2PQ58FF8 381 aa30.46■■■□□ 2.47
TRIM54-201ENST00000296098 TSPYL6Q8N831 410 aa30.46■■■□□ 2.47
TRIM54-201ENST00000296098 FAM83GA6ND36 823 aa30.46■■■□□ 2.47
TRIM54-201ENST00000296098 KCNA6P17658 529 aa30.46■■■□□ 2.47
TRIM54-201ENST00000296098 MRPL50Q8N5N7 158 aaKnown RBP30.45■■■□□ 2.46
TRIM54-201ENST00000296098 ZBTB40Q9NUA8 1239 aa30.44■■■□□ 2.46
TRIM54-201ENST00000296098 ARHGEF10O15013 1369 aa30.44■■■□□ 2.46
TRIM54-201ENST00000296098 SOX12O15370 315 aa30.44■■■□□ 2.46
TRIM54-201ENST00000296098 SBNO1A3KN83 1393 aa30.44■■■□□ 2.46
TRIM54-201ENST00000296098 MAP3K19Q56UN5 1328 aa30.43■■■□□ 2.46
TRIM54-201ENST00000296098 TWISTNBQ3B726 338 aaPredicted RBP30.43■■■□□ 2.46
TRIM54-201ENST00000296098 ARHGAP45Q92619 1136 aa30.43■■■□□ 2.46
TRIM54-201ENST00000296098 FLT4P35916 1363 aa30.43■■■□□ 2.46
TRIM54-201ENST00000296098 NBR1Q14596 966 aa30.42■■■□□ 2.46
TRIM54-201ENST00000296098 DCTN1Q14203 1278 aa30.41■■■□□ 2.46
TRIM54-201ENST00000296098 USP54Q70EL1 1684 aa30.41■■■□□ 2.46
TRIM54-201ENST00000296098 CHD2O14647 1828 aaKnown RBP30.39■■■□□ 2.45
TRIM54-201ENST00000296098 ELL2O00472 640 aaPredicted RBP30.39■■■□□ 2.45
TRIM54-201ENST00000296098 MARF1Q9Y4F3 1742 aaKnown RBP30.38■■■□□ 2.45
TRIM54-201ENST00000296098 C8orf58Q8NAV2 365 aa30.38■■■□□ 2.45
TRIM54-201ENST00000296098 SMC5Q8IY18 1101 aa30.35■■■□□ 2.45
TRIM54-201ENST00000296098 CHMP4BQ9H444 224 aaKnown RBP30.35■■■□□ 2.45
TRIM54-201ENST00000296098 ABCC4O15439 1325 aa30.34■■■□□ 2.45
TRIM54-201ENST00000296098 ANKLE2Q86XL3 938 aa30.33■■■□□ 2.45
TRIM54-201ENST00000296098 DAXXQ9UER7 740 aaPredicted RBP30.33■■■□□ 2.45
TRIM54-201ENST00000296098 KDRP35968 1356 aa30.32■■■□□ 2.45
TRIM54-201ENST00000296098 USP19O94966 1318 aa30.32■■■□□ 2.44
TRIM54-201ENST00000296098 ADAMTSL3P82987 1691 aa30.32■■■□□ 2.44
TRIM54-201ENST00000296098 AMPHP49418 695 aa30.32■■■□□ 2.44
TRIM54-201ENST00000296098 NLRP6P59044 892 aa30.3■■■□□ 2.44
TRIM54-201ENST00000296098 MCM10Q7L590 875 aa30.3■■■□□ 2.44
TRIM54-201ENST00000296098 SEC24BO95487 1268 aa30.3■■■□□ 2.44
TRIM54-201ENST00000296098 API5Q9BZZ5 524 aaKnown RBP30.3■■■□□ 2.44
TRIM54-201ENST00000296098 KIF24Q5T7B8 1368 aa30.3■■■□□ 2.44
TRIM54-201ENST00000296098 IGSF1Q8N6C5 1336 aa30.29■■■□□ 2.44
TRIM54-201ENST00000296098 CHL1O00533 1208 aa30.29■■■□□ 2.44
TRIM54-201ENST00000296098 HAP1P54257 671 aaPredicted RBP30.29■■■□□ 2.44
TRIM54-201ENST00000296098 ZBTB7BO15156 539 aaPredicted RBP30.29■■■□□ 2.44
TRIM54-201ENST00000296098 KIAA0232Q92628 1395 aa30.28■■■□□ 2.44
TRIM54-201ENST00000296098 CRB1P82279 1406 aa30.27■■■□□ 2.44
TRIM54-201ENST00000296098 RTL5Q5HYW3 569 aaPredicted RBP30.27■■■□□ 2.44
TRIM54-201ENST00000296098 SLC4A3P48751 1232 aa30.24■■■□□ 2.43
TRIM54-201ENST00000296098 EYA1Q99502 592 aa30.24■■■□□ 2.43
TRIM54-201ENST00000296098 MTHFSDQ2M296 383 aaKnown RBP30.23■■■□□ 2.43
TRIM54-201ENST00000296098 UPF2Q9HAU5 1272 aaKnown RBP30.23■■■□□ 2.43
TRIM54-201ENST00000296098 NUCB1Q02818 461 aa30.22■■■□□ 2.43
TRIM54-201ENST00000296098 NUTM2GQ5VZR2 741 aa30.22■■■□□ 2.43
TRIM54-201ENST00000296098 ABTB2Q8N961 1025 aa30.22■■■□□ 2.43
TRIM54-201ENST00000296098 PHF8Q9UPP1 1060 aa30.22■■■□□ 2.43
TRIM54-201ENST00000296098 ADGRL3Q9HAR2 1447 aa30.21■■■□□ 2.43
TRIM54-201ENST00000296098 HOXC9P31274 260 aa30.21■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms