RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 E9PSI1 815 aa29.98■■■□□ 2.39
PTX3-201ENST00000295927 TMPOP42166 694 aaKnown RBP29.98■■■□□ 2.39
PTX3-201ENST00000295927 AMPHP49418 695 aa29.96■■■□□ 2.39
PTX3-201ENST00000295927 RGPD1P0DJD0 1748 aa29.96■■■□□ 2.39
PTX3-201ENST00000295927 WDR63Q8IWG1 891 aa29.95■■■□□ 2.39
PTX3-201ENST00000295927 KIF24Q5T7B8 1368 aa29.95■■■□□ 2.38
PTX3-201ENST00000295927 LTN1O94822 1766 aa29.94■■■□□ 2.38
PTX3-201ENST00000295927 NFAT5O94916 1531 aa29.94■■■□□ 2.38
PTX3-201ENST00000295927 NEFMP07197 916 aa29.93■■■□□ 2.38
PTX3-201ENST00000295927 ALS2Q96Q42 1657 aa29.91■■■□□ 2.38
PTX3-201ENST00000295927 PHACTR3Q96KR7 559 aa29.91■■■□□ 2.38
PTX3-201ENST00000295927 TRIM35Q9UPQ4 493 aa29.9■■■□□ 2.38
PTX3-201ENST00000295927 HOXC9P31274 260 aa29.9■■■□□ 2.38
PTX3-201ENST00000295927 RIPK4P57078 832 aa29.9■■■□□ 2.38
PTX3-201ENST00000295927 KCNH5Q8NCM2 988 aa29.9■■■□□ 2.38
PTX3-201ENST00000295927 LMOD2Q6P5Q4 547 aa29.89■■■□□ 2.38
PTX3-201ENST00000295927 SLIT3O75094 1523 aa29.89■■■□□ 2.37
PTX3-201ENST00000295927 DDX17Q92841 729 aaKnown RBP29.88■■■□□ 2.37
PTX3-201ENST00000295927 SULT6B1Q6IMI4 303 aa29.88■■■□□ 2.37
PTX3-201ENST00000295927 NPHP3Q7Z494 1330 aa29.87■■■□□ 2.37
PTX3-201ENST00000295927 AEBP1Q8IUX7 1158 aa29.87■■■□□ 2.37
PTX3-201ENST00000295927 RTL1A6NKG5 1358 aa29.87■■■□□ 2.37
PTX3-201ENST00000295927 ERICH6BQ5W0A0 696 aa29.86■■■□□ 2.37
PTX3-201ENST00000295927 RRP1P56182 461 aaKnown RBP29.86■■■□□ 2.37
PTX3-201ENST00000295927 NFE2L2Q16236 605 aa29.86■■■□□ 2.37
PTX3-201ENST00000295927 ARHGEF10O15013 1369 aa29.85■■■□□ 2.37
PTX3-201ENST00000295927 USP19O94966 1318 aa29.85■■■□□ 2.37
PTX3-201ENST00000295927 PHRF1Q9P1Y6 1649 aaKnown RBP29.83■■■□□ 2.37
PTX3-201ENST00000295927 GCP02774 474 aa29.83■■■□□ 2.37
PTX3-201ENST00000295927 BRINP3Q76B58 766 aa29.83■■■□□ 2.37
PTX3-201ENST00000295927 DLG5Q8TDM6 1919 aa29.83■■■□□ 2.37
PTX3-201ENST00000295927 PXDNQ92626 1479 aa29.82■■■□□ 2.36
PTX3-201ENST00000295927 SLAIN2Q9P270 581 aa29.82■■■□□ 2.36
PTX3-201ENST00000295927 IP6K1Q92551 441 aa29.81■■■□□ 2.36
PTX3-201ENST00000295927 EYA1Q99502 592 aa29.81■■■□□ 2.36
PTX3-201ENST00000295927 PLEKHG5O94827 1062 aa29.8■■■□□ 2.36
PTX3-201ENST00000295927 IGSF1Q8N6C5 1336 aa29.8■■■□□ 2.36
PTX3-201ENST00000295927 MYH16Q9H6N6 1097 aa29.79■■■□□ 2.36
PTX3-201ENST00000295927 IL16Q14005 1332 aa29.78■■■□□ 2.36
PTX3-201ENST00000295927 MED1Q15648 1581 aaPredicted RBP29.78■■■□□ 2.36
PTX3-201ENST00000295927 KDRP35968 1356 aa29.77■■■□□ 2.36
PTX3-201ENST00000295927 TNS3Q68CZ2 1445 aa29.77■■■□□ 2.36
PTX3-201ENST00000295927 ARHGEF25Q86VW2 580 aa29.77■■■□□ 2.36
PTX3-201ENST00000295927 ZBTB7CA1YPR0 619 aa29.76■■■□□ 2.35
PTX3-201ENST00000295927 LTV1Q96GA3 475 aaPredicted RBP29.76■■■□□ 2.35
PTX3-201ENST00000295927 SPATA31A3Q5VYP0 1347 aa29.73■■■□□ 2.35
PTX3-201ENST00000295927 FANCIQ9NVI1 1328 aa29.71■■■□□ 2.35
PTX3-201ENST00000295927 PLIN1O60240 522 aa29.71■■■□□ 2.35
PTX3-201ENST00000295927 LMOD3Q0VAK6 560 aa29.71■■■□□ 2.35
PTX3-201ENST00000295927 TSR2Q969E8 191 aaKnown RBP29.71■■■□□ 2.35
PTX3-201ENST00000295927 PPP4R2Q9NY27 417 aa29.71■■■□□ 2.35
PTX3-201ENST00000295927 CRYBG1Q9Y4K1 1723 aa29.69■■■□□ 2.34
PTX3-201ENST00000295927 THUMPD2Q9BTF0 503 aaKnown RBP29.68■■■□□ 2.34
PTX3-201ENST00000295927 RGPD2P0DJD1 1756 aa29.68■■■□□ 2.34
PTX3-201ENST00000295927 CALD1Q05682 793 aaKnown RBP29.67■■■□□ 2.34
PTX3-201ENST00000295927 SOS2Q07890 1332 aaPredicted RBP29.67■■■□□ 2.34
PTX3-201ENST00000295927 RGPD5Q99666 1765 aa29.66■■■□□ 2.34
PTX3-201ENST00000295927 ZC3H6P61129 1189 aaKnown RBP29.65■■■□□ 2.34
PTX3-201ENST00000295927 LTBP4Q8N2S1 1624 aa29.65■■■□□ 2.34
PTX3-201ENST00000295927 FAM83GA6ND36 823 aa29.65■■■□□ 2.34
PTX3-201ENST00000295927 BCAR3O75815 825 aa29.65■■■□□ 2.34
PTX3-201ENST00000295927 NHSL1Q5SYE7 1610 aa29.64■■■□□ 2.34
PTX3-201ENST00000295927 CABLES1Q8TDN4 633 aa29.64■■■□□ 2.34
PTX3-201ENST00000295927 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.63■■■□□ 2.33
PTX3-201ENST00000295927 MTHFSDQ2M296 383 aaKnown RBP29.63■■■□□ 2.33
PTX3-201ENST00000295927 NBPF6Q5VWK0 638 aa29.63■■■□□ 2.33
PTX3-201ENST00000295927 USHBP1Q8N6Y0 703 aa29.63■■■□□ 2.33
PTX3-201ENST00000295927 NBPF4Q96M43 638 aa29.63■■■□□ 2.33
PTX3-201ENST00000295927 EXOSC9Q06265 439 aaKnown RBP29.62■■■□□ 2.33
PTX3-201ENST00000295927 AXIN2Q9Y2T1 843 aa29.62■■■□□ 2.33
PTX3-201ENST00000295927 DCTN1Q14203 1278 aa29.61■■■□□ 2.33
PTX3-201ENST00000295927 LAS1LQ9Y4W2 734 aaKnown RBP29.61■■■□□ 2.33
PTX3-201ENST00000295927 IFT57Q9NWB7 429 aa29.61■■■□□ 2.33
PTX3-201ENST00000295927 RARSP54136 660 aaKnown RBP29.6■■■□□ 2.33
PTX3-201ENST00000295927 ANKRD24Q8TF21 1146 aa29.6■■■□□ 2.33
PTX3-201ENST00000295927 GNAI1P63096 354 aa29.59■■■□□ 2.33
PTX3-201ENST00000295927 EXOC6Q8TAG9 804 aa29.59■■■□□ 2.33
PTX3-201ENST00000295927 COL18A1P39060 1754 aa29.59■■■□□ 2.33
PTX3-201ENST00000295927 CT47B1P0C2W7 299 aaPredicted RBP29.59■■■□□ 2.33
PTX3-201ENST00000295927 ZNF853P0CG23 659 aa29.59■■■□□ 2.33
PTX3-201ENST00000295927 GAS2L2Q8NHY3 880 aa29.59■■■□□ 2.33
PTX3-201ENST00000295927 LRRC59Q96AG4 307 aaKnown RBP29.59■■■□□ 2.33
PTX3-201ENST00000295927 C20orf194Q5TEA3 1177 aa29.57■■■□□ 2.32
PTX3-201ENST00000295927 CAMTA1Q9Y6Y1 1673 aa29.56■■■□□ 2.32
PTX3-201ENST00000295927 MCM10Q7L590 875 aa29.55■■■□□ 2.32
PTX3-201ENST00000295927 CFAP44Q96MT7 982 aa29.55■■■□□ 2.32
PTX3-201ENST00000295927 NCAPD2Q15021 1401 aa29.55■■■□□ 2.32
PTX3-201ENST00000295927 B4GALNT3Q6L9W6 998 aa29.55■■■□□ 2.32
PTX3-201ENST00000295927 CRBNQ96SW2 442 aa29.53■■■□□ 2.32
PTX3-201ENST00000295927 CPDO75976 1380 aa29.53■■■□□ 2.32
PTX3-201ENST00000295927 ERBB3P21860 1342 aa29.53■■■□□ 2.32
PTX3-201ENST00000295927 MBIPQ9NS73 344 aa29.53■■■□□ 2.32
PTX3-201ENST00000295927 ABCC6O95255 1503 aa29.53■■■□□ 2.32
PTX3-201ENST00000295927 ROBO1Q9Y6N7 1651 aa29.51■■■□□ 2.32
PTX3-201ENST00000295927 RTF1Q92541 710 aaKnown RBP29.51■■■□□ 2.32
PTX3-201ENST00000295927 KIAA0232Q92628 1395 aa29.51■■■□□ 2.31
PTX3-201ENST00000295927 ABCA3Q99758 1704 aa29.51■■■□□ 2.31
PTX3-201ENST00000295927 CHRNA2Q15822 529 aa29.49■■■□□ 2.31
PTX3-201ENST00000295927 BCL2L13Q9BXK5 485 aa29.49■■■□□ 2.31
PTX3-201ENST00000295927 LMO7Q8WWI1 1683 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms