RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 OVOS2Q6IE36 1432 aa23.46■■□□□ 1.35
PDLIM3-201ENST00000284767 SSH2Q76I76 1423 aa23.45■■□□□ 1.35
PDLIM3-201ENST00000284767 PIK3R4Q99570 1358 aa23.45■■□□□ 1.34
PDLIM3-201ENST00000284767 VIRMAQ69YN4 1812 aaKnown RBP23.45■■□□□ 1.34
PDLIM3-201ENST00000284767 RARSP54136 660 aaKnown RBP23.44■■□□□ 1.34
PDLIM3-201ENST00000284767 FRAT1Q92837 279 aaPredicted RBP23.44■■□□□ 1.34
PDLIM3-201ENST00000284767 NUTM2GQ5VZR2 741 aa23.44■■□□□ 1.34
PDLIM3-201ENST00000284767 MYH16Q9H6N6 1097 aa23.43■■□□□ 1.34
PDLIM3-201ENST00000284767 SLC4A3P48751 1232 aa23.43■■□□□ 1.34
PDLIM3-201ENST00000284767 CHD2O14647 1828 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-201ENST00000284767 HSP90AB2PQ58FF8 381 aa23.42■■□□□ 1.34
PDLIM3-201ENST00000284767 THUMPD2Q9BTF0 503 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-201ENST00000284767 TNNQ9UQP3 1299 aa23.42■■□□□ 1.34
PDLIM3-201ENST00000284767 NCBP3Q53F19 620 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-201ENST00000284767 AEBP1Q8IUX7 1158 aa23.41■■□□□ 1.34
PDLIM3-201ENST00000284767 PANK1Q8TE04 598 aa23.41■■□□□ 1.34
PDLIM3-201ENST00000284767 PNNQ9H307 717 aaKnown RBP23.41■■□□□ 1.34
PDLIM3-201ENST00000284767 CANXP27824 592 aaKnown RBP23.4■■□□□ 1.34
PDLIM3-201ENST00000284767 EXOSC9Q06265 439 aaKnown RBP23.4■■□□□ 1.34
PDLIM3-201ENST00000284767 EIF4A2Q14240 407 aaKnown RBP23.4■■□□□ 1.34
PDLIM3-201ENST00000284767 NALCNQ8IZF0 1738 aa23.4■■□□□ 1.34
PDLIM3-201ENST00000284767 NPHP4O75161 1426 aaPredicted RBP23.38■■□□□ 1.33
PDLIM3-201ENST00000284767 PEAK1Q9H792 1746 aa23.38■■□□□ 1.33
PDLIM3-201ENST00000284767 FMN2Q9NZ56 1722 aa23.38■■□□□ 1.33
PDLIM3-201ENST00000284767 RGS3P49796 1198 aa23.38■■□□□ 1.33
PDLIM3-201ENST00000284767 NFE2L2Q16236 605 aa23.37■■□□□ 1.33
PDLIM3-201ENST00000284767 RTN4Q9NQC3 1192 aaKnown RBP23.37■■□□□ 1.33
PDLIM3-201ENST00000284767 COG6Q9Y2V7 657 aa23.37■■□□□ 1.33
PDLIM3-201ENST00000284767 TTC21AQ8NDW8 1320 aa23.37■■□□□ 1.33
PDLIM3-201ENST00000284767 MAP3K19Q56UN5 1328 aa23.36■■□□□ 1.33
PDLIM3-201ENST00000284767 USP31Q70CQ4 1352 aa23.36■■□□□ 1.33
PDLIM3-201ENST00000284767 ANKARQ7Z5J8 1434 aa23.35■■□□□ 1.33
PDLIM3-201ENST00000284767 NLRP6P59044 892 aa23.35■■□□□ 1.33
PDLIM3-201ENST00000284767 ANO8Q9HCE9 1232 aaPredicted RBP23.35■■□□□ 1.33
PDLIM3-201ENST00000284767 SULT6B1Q6IMI4 303 aa23.35■■□□□ 1.33
PDLIM3-201ENST00000284767 PIK3C2AO00443 1686 aa23.35■■□□□ 1.33
PDLIM3-201ENST00000284767 CLUAP1Q96AJ1 413 aa23.34■■□□□ 1.33
PDLIM3-201ENST00000284767 RLBP1P12271 317 aa23.34■■□□□ 1.33
PDLIM3-201ENST00000284767 C14orf37Q86TY3 774 aa23.34■■□□□ 1.33
PDLIM3-201ENST00000284767 FAM83GA6ND36 823 aa23.33■■□□□ 1.33
PDLIM3-201ENST00000284767 PDE3AQ14432 1141 aa23.33■■□□□ 1.33
PDLIM3-201ENST00000284767 DCTN1Q14203 1278 aa23.32■■□□□ 1.32
PDLIM3-201ENST00000284767 PHF8Q9UPP1 1060 aa23.32■■□□□ 1.32
PDLIM3-201ENST00000284767 BRPF3Q9ULD4 1205 aa23.31■■□□□ 1.32
PDLIM3-201ENST00000284767 IL16Q14005 1332 aa23.31■■□□□ 1.32
PDLIM3-201ENST00000284767 ABTB2Q8N961 1025 aa23.31■■□□□ 1.32
PDLIM3-201ENST00000284767 ESCO1Q5FWF5 840 aa23.3■■□□□ 1.32
PDLIM3-201ENST00000284767 SSH1Q8WYL5 1049 aa23.29■■□□□ 1.32
PDLIM3-201ENST00000284767 ADGRL3Q9HAR2 1447 aa23.29■■□□□ 1.32
PDLIM3-201ENST00000284767 FRAT2O75474 233 aaPredicted RBP23.28■■□□□ 1.32
PDLIM3-201ENST00000284767 SMC4Q9NTJ3 1288 aa23.28■■□□□ 1.32
PDLIM3-201ENST00000284767 AMPHP49418 695 aa23.27■■□□□ 1.32
PDLIM3-201ENST00000284767 DLG5Q8TDM6 1919 aa23.27■■□□□ 1.32
PDLIM3-201ENST00000284767 PLEKHG5O94827 1062 aa23.26■■□□□ 1.31
PDLIM3-201ENST00000284767 IGHDP01880 384 aa23.26■■□□□ 1.31
PDLIM3-201ENST00000284767 ORAI2Q96SN7 254 aa23.26■■□□□ 1.31
PDLIM3-201ENST00000284767 XPCQ01831 940 aaPredicted RBP23.26■■□□□ 1.31
PDLIM3-201ENST00000284767 USP19O94966 1318 aa23.25■■□□□ 1.31
PDLIM3-201ENST00000284767 MARF1Q9Y4F3 1742 aaKnown RBP23.24■■□□□ 1.31
PDLIM3-201ENST00000284767 ELL2O00472 640 aaPredicted RBP23.24■■□□□ 1.31
PDLIM3-201ENST00000284767 AAMPQ13685 434 aa23.24■■□□□ 1.31
PDLIM3-201ENST00000284767 SBNO1A3KN83 1393 aa23.24■■□□□ 1.31
PDLIM3-201ENST00000284767 FLT4P35916 1363 aa23.24■■□□□ 1.31
PDLIM3-201ENST00000284767 TSPYL6Q8N831 410 aa23.23■■□□□ 1.31
PDLIM3-201ENST00000284767 PROSER2Q86WR7 435 aaPredicted RBP23.22■■□□□ 1.31
PDLIM3-201ENST00000284767 MBIPQ9NS73 344 aa23.22■■□□□ 1.31
PDLIM3-201ENST00000284767 HSPA2P54652 639 aa23.22■■□□□ 1.31
PDLIM3-201ENST00000284767 FOXO3O43524 673 aa23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 CT47B1P0C2W7 299 aaPredicted RBP23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 PSME1Q06323 249 aa23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 BECN1Q14457 450 aa23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 LTV1Q96GA3 475 aaPredicted RBP23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 EYA1Q99502 592 aa23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 RGPD1P0DJD0 1748 aa23.21■■□□□ 1.31
PDLIM3-201ENST00000284767 ZKSCAN2Q63HK3 967 aa23.2■■□□□ 1.3
PDLIM3-201ENST00000284767 MCM10Q7L590 875 aa23.2■■□□□ 1.3
PDLIM3-201ENST00000284767 NOB1Q9ULX3 412 aaKnown RBP23.2■■□□□ 1.3
PDLIM3-201ENST00000284767 TRIM27P14373 513 aa23.19■■□□□ 1.3
PDLIM3-201ENST00000284767 ZNF853P0CG23 659 aa23.19■■□□□ 1.3
PDLIM3-201ENST00000284767 HOXC9P31274 260 aa23.18■■□□□ 1.3
PDLIM3-201ENST00000284767 IFT57Q9NWB7 429 aa23.18■■□□□ 1.3
PDLIM3-201ENST00000284767 GNAI1P63096 354 aa23.18■■□□□ 1.3
PDLIM3-201ENST00000284767 FTSJ3Q8IY81 847 aaKnown RBP23.17■■□□□ 1.3
PDLIM3-201ENST00000284767 ZBTB7CA1YPR0 619 aa23.17■■□□□ 1.3
PDLIM3-201ENST00000284767 DZIP1LQ8IYY4 767 aaKnown RBP23.17■■□□□ 1.3
PDLIM3-201ENST00000284767 LMOD3Q0VAK6 560 aa23.16■■□□□ 1.3
PDLIM3-201ENST00000284767 CFAP44Q96MT7 982 aa23.16■■□□□ 1.3
PDLIM3-201ENST00000284767 PCDHB15Q9Y5E8 787 aa23.16■■□□□ 1.3
PDLIM3-201ENST00000284767 VAMP4O75379 141 aa23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 CALD1Q05682 793 aaKnown RBP23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 C8orf58Q8NAV2 365 aa23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 NWD1Q149M9 1564 aa23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 MTHFSDQ2M296 383 aaKnown RBP23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 ARHGEF10O15013 1369 aa23.15■■□□□ 1.3
PDLIM3-201ENST00000284767 MVPQ14764 893 aaKnown RBP23.14■■□□□ 1.29
PDLIM3-201ENST00000284767 KRT24Q2M2I5 525 aa23.14■■□□□ 1.29
PDLIM3-201ENST00000284767 LMOD2Q6P5Q4 547 aa23.14■■□□□ 1.29
PDLIM3-201ENST00000284767 ATF7IPQ6VMQ6 1270 aa23.14■■□□□ 1.29
PDLIM3-201ENST00000284767 IGSF1Q8N6C5 1336 aa23.14■■□□□ 1.29
PDLIM3-201ENST00000284767 USHBP1Q8N6Y0 703 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms