RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 CDC45O75419 566 aa15.37■□□□□ 0.05
CHMP3-201ENST00000263856 ERBB4Q15303 1308 aa15.37■□□□□ 0.05
CHMP3-201ENST00000263856 ARHGEF28Q8N1W1 1705 aaKnown RBP15.37■□□□□ 0.05
CHMP3-201ENST00000263856 GNAI1P63096 354 aa15.36■□□□□ 0.05
CHMP3-201ENST00000263856 RAB3GAP1Q15042 981 aa15.36■□□□□ 0.05
CHMP3-201ENST00000263856 NOL8Q76FK4 1167 aaKnown RBP15.36■□□□□ 0.05
CHMP3-201ENST00000263856 OTUD7AQ8TE49 926 aaPredicted RBP15.36■□□□□ 0.05
CHMP3-201ENST00000263856 ANP32BQ92688 251 aaKnown RBP15.36■□□□□ 0.05
CHMP3-201ENST00000263856 KIF2CQ99661 725 aa15.36■□□□□ 0.05
CHMP3-201ENST00000263856 SNX21Q969T3 373 aa15.36■□□□□ 0.05
CHMP3-201ENST00000263856 CLCN1P35523 988 aa15.36■□□□□ 0.05
CHMP3-201ENST00000263856 NEURL4Q96JN8 1562 aa15.35■□□□□ 0.05
CHMP3-201ENST00000263856 SLC4A10Q6U841 1118 aa15.34■□□□□ 0.05
CHMP3-201ENST00000263856 UBE2Q2Q8WVN8 375 aa15.34■□□□□ 0.05
CHMP3-201ENST00000263856 ZBTB7CA1YPR0 619 aa15.34■□□□□ 0.05
CHMP3-201ENST00000263856 GSPT1P15170 499 aaKnown RBP15.34■□□□□ 0.05
CHMP3-201ENST00000263856 CAVIN1Q6NZI2 390 aaKnown RBP15.34■□□□□ 0.05
CHMP3-201ENST00000263856 CHAMP1Q96JM3 812 aa15.34■□□□□ 0.05
CHMP3-201ENST00000263856 ABCC3O15438 1527 aa15.34■□□□□ 0.05
CHMP3-201ENST00000263856 CHMP4BQ9H444 224 aaKnown RBP15.34■□□□□ 0.05
CHMP3-201ENST00000263856 LRRC7Q96NW7 1537 aa15.33■□□□□ 0.05
CHMP3-201ENST00000263856 FOXD4L6Q3SYB3 417 aaPredicted RBP15.33■□□□□ 0.04
CHMP3-201ENST00000263856 FOXD4L3Q6VB84 417 aaPredicted RBP15.33■□□□□ 0.04
CHMP3-201ENST00000263856 POGZQ7Z3K3 1410 aa15.33■□□□□ 0.04
CHMP3-201ENST00000263856 NASPP49321 788 aaPredicted RBP15.33■□□□□ 0.04
CHMP3-201ENST00000263856 USP32Q8NFA0 1604 aa15.33■□□□□ 0.04
CHMP3-201ENST00000263856 COL3A1P02461 1466 aaPredicted RBP15.33■□□□□ 0.04
CHMP3-201ENST00000263856 CALD1Q05682 793 aaKnown RBP15.32■□□□□ 0.04
CHMP3-201ENST00000263856 PKP1Q13835 747 aa15.32■□□□□ 0.04
CHMP3-201ENST00000263856 PUS7Q96PZ0 661 aaKnown RBP15.32■□□□□ 0.04
CHMP3-201ENST00000263856 CIZ1Q9ULV3 898 aaPredicted RBP15.32■□□□□ 0.04
CHMP3-201ENST00000263856 LMTK2Q8IWU2 1503 aa15.32■□□□□ 0.04
CHMP3-201ENST00000263856 YTHDC2Q9H6S0 1430 aaKnown RBP15.32■□□□□ 0.04
CHMP3-201ENST00000263856 SKOR2Q2VWA4 1001 aaPredicted RBP15.32■□□□□ 0.04
CHMP3-201ENST00000263856 MIS18AQ9NYP9 233 aa15.32■□□□□ 0.04
CHMP3-201ENST00000263856 BAG4O95429 457 aaKnown RBP15.31■□□□□ 0.04
CHMP3-201ENST00000263856 MCM10Q7L590 875 aa15.31■□□□□ 0.04
CHMP3-201ENST00000263856 NEXMIFQ5QGS0 1516 aa15.31■□□□□ 0.04
CHMP3-201ENST00000263856 FRMPD1Q5SYB0 1578 aa15.31■□□□□ 0.04
CHMP3-201ENST00000263856 HSP90AA2PQ14568 343 aaPredicted RBP15.31■□□□□ 0.04
CHMP3-201ENST00000263856 API5Q9BZZ5 524 aaKnown RBP15.31■□□□□ 0.04
CHMP3-201ENST00000263856 SLC52A1Q9NWF4 448 aa15.31■□□□□ 0.04
CHMP3-201ENST00000263856 NCBP3Q53F19 620 aaKnown RBP15.3■□□□□ 0.04
CHMP3-201ENST00000263856 TSHZ3Q63HK5 1081 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 AEBP1Q8IUX7 1158 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 PLEKHM2Q8IWE5 1019 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 SIGLEC1Q9BZZ2 1709 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 DDIT3P35638 169 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 TXNDC2Q86VQ3 553 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 IFT57Q9NWB7 429 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 COG3Q96JB2 828 aa15.3■□□□□ 0.04
CHMP3-201ENST00000263856 ZGPATQ8N5A5 531 aaKnown RBP15.29■□□□□ 0.04
CHMP3-201ENST00000263856 SULT6B1Q6IMI4 303 aa15.29■□□□□ 0.04
CHMP3-201ENST00000263856 PRPF40AO75400 957 aaKnown RBP15.28■□□□□ 0.04
CHMP3-201ENST00000263856 NECTIN2Q92692 538 aa15.28■□□□□ 0.04
CHMP3-201ENST00000263856 RBM27Q9P2N5 1060 aaKnown RBP15.28■□□□□ 0.04
CHMP3-201ENST00000263856 CD163L1Q9NR16 1453 aa15.28■□□□□ 0.04
CHMP3-201ENST00000263856 CASC1Q6TDU7 716 aa15.28■□□□□ 0.04
CHMP3-201ENST00000263856 HECW2Q9P2P5 1572 aa15.28■□□□□ 0.04
CHMP3-201ENST00000263856 NCOA3Q9Y6Q9 1424 aa15.27■□□□□ 0.04
CHMP3-201ENST00000263856 MYO5BQ9ULV0 1848 aa15.27■□□□□ 0.04
CHMP3-201ENST00000263856 MSNP26038 577 aaKnown RBP15.27■□□□□ 0.04
CHMP3-201ENST00000263856 CFAP44Q96MT7 982 aa15.27■□□□□ 0.04
CHMP3-201ENST00000263856 ARID3AQ99856 593 aa15.27■□□□□ 0.04
CHMP3-201ENST00000263856 FAM135BQ49AJ0 1406 aa15.27■□□□□ 0.04
CHMP3-201ENST00000263856 TTC22Q5TAA0 569 aa15.27■□□□□ 0.03
CHMP3-201ENST00000263856 INTS3Q68E01 1043 aaKnown RBP15.27■□□□□ 0.03
CHMP3-201ENST00000263856 MEIS3Q99687 375 aa15.27■□□□□ 0.03
CHMP3-201ENST00000263856 CFAP74Q9C0B2 1584 aa15.27■□□□□ 0.03
CHMP3-201ENST00000263856 IL13P35225 146 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 VSIG10Q8N0Z9 540 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 ABCC4O15439 1325 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 F6X3S4 739 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 SDSP20132 328 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 RABEP1Q15276 862 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 ZNF428Q96B54 188 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 PTPRMP28827 1452 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 LMOD3Q0VAK6 560 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 PLPPR3Q6T4P5 718 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 ARHGAP45Q92619 1136 aa15.26■□□□□ 0.03
CHMP3-201ENST00000263856 YEATS2Q9ULM3 1422 aa15.25■□□□□ 0.03
CHMP3-201ENST00000263856 ST18O60284 1047 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 RNF214Q8ND24 703 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 MAP2P11137 1827 aaKnown RBP15.24■□□□□ 0.03
CHMP3-201ENST00000263856 MLH3Q9UHC1 1453 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 ZFYVE9O95405 1425 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 PIK3C2BO00750 1634 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 PNPLA6Q8IY17 1366 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 SLC4A2P04920 1241 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 PTMSP20962 102 aa15.24■□□□□ 0.03
CHMP3-201ENST00000263856 GLIPR1L2Q4G1C9 344 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 RILPL2Q969X0 211 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 DCTPP1Q9H773 170 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 EXOC6BQ9Y2D4 811 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 CCDC173Q0VFZ6 552 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 KLHL40Q2TBA0 621 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.23■□□□□ 0.03
CHMP3-201ENST00000263856 USP26Q9BXU7 913 aa15.23■□□□□ 0.03
CHMP3-201ENST00000263856 ISY1Q9ULR0 285 aaKnown RBP15.23■□□□□ 0.03
CHMP3-201ENST00000263856 MSH6P52701 1360 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms