RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TPRNQ4KMQ1 711 aa15.7■□□□□ 0.1
LIG1-201ENST00000263274 GCC1Q96CN9 775 aa15.7■□□□□ 0.1
LIG1-201ENST00000263274 GRPEL1Q9HAV7 217 aa15.7■□□□□ 0.1
LIG1-201ENST00000263274 ADGRB1O14514 1584 aa15.69■□□□□ 0.1
LIG1-201ENST00000263274 SMARCA5O60264 1052 aaPredicted RBP15.69■□□□□ 0.1
LIG1-201ENST00000263274 MIS18AQ9NYP9 233 aa15.69■□□□□ 0.1
LIG1-201ENST00000263274 SSFA2P28290 1259 aa15.69■□□□□ 0.1
LIG1-201ENST00000263274 MRE11P49959 708 aa15.69■□□□□ 0.1
LIG1-201ENST00000263274 BMP2KLQ5H9B9 411 aa15.69■□□□□ 0.1
LIG1-201ENST00000263274 DDX49Q9Y6V7 483 aaKnown RBP15.68■□□□□ 0.1
LIG1-201ENST00000263274 POGZQ7Z3K3 1410 aa15.68■□□□□ 0.1
LIG1-201ENST00000263274 ABCA9Q8IUA7 1624 aa15.68■□□□□ 0.1
LIG1-201ENST00000263274 GLI2P10070 1586 aa15.68■□□□□ 0.1
LIG1-201ENST00000263274 SULT6B1Q6IMI4 303 aa15.67■□□□□ 0.1
LIG1-201ENST00000263274 NOL8Q76FK4 1167 aaKnown RBP15.67■□□□□ 0.1
LIG1-201ENST00000263274 MCM10Q7L590 875 aa15.67■□□□□ 0.1
LIG1-201ENST00000263274 K7ELQ4 463 aaPredicted RBP15.67■□□□□ 0.1
LIG1-201ENST00000263274 PDIA4P13667 645 aaKnown RBP15.67■□□□□ 0.1
LIG1-201ENST00000263274 API5Q9BZZ5 524 aaKnown RBP15.67■□□□□ 0.1
LIG1-201ENST00000263274 CDC45O75419 566 aa15.67■□□□□ 0.1
LIG1-201ENST00000263274 NECTIN2Q92692 538 aa15.67■□□□□ 0.1
LIG1-201ENST00000263274 YTHDC2Q9H6S0 1430 aaKnown RBP15.66■□□□□ 0.1
LIG1-201ENST00000263274 AEBP1Q8IUX7 1158 aa15.66■□□□□ 0.1
LIG1-201ENST00000263274 SIRT2Q8IXJ6 389 aa15.66■□□□□ 0.1
LIG1-201ENST00000263274 GAS2L2Q8NHY3 880 aa15.66■□□□□ 0.1
LIG1-201ENST00000263274 ANP32BQ92688 251 aaKnown RBP15.66■□□□□ 0.1
LIG1-201ENST00000263274 SETBP1Q9Y6X0 1596 aa15.66■□□□□ 0.1
LIG1-201ENST00000263274 RBM25P49756 843 aaKnown RBP15.66■□□□□ 0.1
LIG1-201ENST00000263274 OTUD7AQ8TE49 926 aaPredicted RBP15.65■□□□□ 0.1
LIG1-201ENST00000263274 MCTP1Q6DN14 999 aa15.65■□□□□ 0.1
LIG1-201ENST00000263274 DIP2BQ9P265 1576 aa15.65■□□□□ 0.1
LIG1-201ENST00000263274 LMOD3Q0VAK6 560 aa15.64■□□□□ 0.09
LIG1-201ENST00000263274 BCL11BQ9C0K0 894 aaPredicted RBP15.64■□□□□ 0.09
LIG1-201ENST00000263274 ABCC3O15438 1527 aa15.64■□□□□ 0.09
LIG1-201ENST00000263274 IFT57Q9NWB7 429 aa15.64■□□□□ 0.09
LIG1-201ENST00000263274 PPIP5K1Q6PFW1 1433 aa15.64■□□□□ 0.09
LIG1-201ENST00000263274 FOXD4L6Q3SYB3 417 aaPredicted RBP15.63■□□□□ 0.09
LIG1-201ENST00000263274 FOXD4L3Q6VB84 417 aaPredicted RBP15.63■□□□□ 0.09
LIG1-201ENST00000263274 NUDT16Q96DE0 195 aaKnown RBP15.63■□□□□ 0.09
LIG1-201ENST00000263274 YEATS2Q9ULM3 1422 aa15.63■□□□□ 0.09
LIG1-201ENST00000263274 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
LIG1-201ENST00000263274 CFAP44Q96MT7 982 aa15.62■□□□□ 0.09
LIG1-201ENST00000263274 CASC1Q6TDU7 716 aa15.62■□□□□ 0.09
LIG1-201ENST00000263274 GAS2L3Q86XJ1 694 aa15.62■□□□□ 0.09
LIG1-201ENST00000263274 SNX21Q969T3 373 aa15.62■□□□□ 0.09
LIG1-201ENST00000263274 IL13P35225 146 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 ZNF428Q96B54 188 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 FSD2A1L4K1 749 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 ZNF692Q9BU19 519 aaPredicted RBP15.61■□□□□ 0.09
LIG1-201ENST00000263274 ZMYM3Q14202 1370 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 F6X3S4 739 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 SLC4A2P04920 1241 aa15.61■□□□□ 0.09
LIG1-201ENST00000263274 WASLO00401 505 aaPredicted RBP15.6■□□□□ 0.09
LIG1-201ENST00000263274 GSPT1P15170 499 aaKnown RBP15.6■□□□□ 0.09
LIG1-201ENST00000263274 TSHZ3Q63HK5 1081 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 PPLO60437 1756 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 MYO3AQ8NEV4 1616 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 LMTK2Q8IWU2 1503 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 MLH3Q9UHC1 1453 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 CEBPAP49715 358 aaPredicted RBP15.6■□□□□ 0.09
LIG1-201ENST00000263274 PLEKHM2Q8IWE5 1019 aa15.6■□□□□ 0.09
LIG1-201ENST00000263274 KIF2CQ99661 725 aa15.59■□□□□ 0.09
LIG1-201ENST00000263274 CAMSAP1Q5T5Y3 1602 aa15.59■□□□□ 0.09
LIG1-201ENST00000263274 RAB3GAP1Q15042 981 aa15.59■□□□□ 0.09
LIG1-201ENST00000263274 CAVIN1Q6NZI2 390 aaKnown RBP15.59■□□□□ 0.09
LIG1-201ENST00000263274 MEIS3Q99687 375 aa15.59■□□□□ 0.09
LIG1-201ENST00000263274 SKOR2Q2VWA4 1001 aaPredicted RBP15.59■□□□□ 0.09
LIG1-201ENST00000263274 ARHGAP45Q92619 1136 aa15.59■□□□□ 0.09
LIG1-201ENST00000263274 RTF1Q92541 710 aaKnown RBP15.58■□□□□ 0.09
LIG1-201ENST00000263274 CIZ1Q9ULV3 898 aaPredicted RBP15.58■□□□□ 0.09
LIG1-201ENST00000263274 CCDC61Q9Y6R9 512 aa15.58■□□□□ 0.09
LIG1-201ENST00000263274 IFT172Q9UG01 1749 aa15.58■□□□□ 0.08
LIG1-201ENST00000263274 ESPNB1AK53 854 aa15.58■□□□□ 0.08
LIG1-201ENST00000263274 ZBTB7CA1YPR0 619 aa15.58■□□□□ 0.08
LIG1-201ENST00000263274 INTS3Q68E01 1043 aaKnown RBP15.58■□□□□ 0.08
LIG1-201ENST00000263274 TRIM6-TRIM34B2RNG4 842 aa15.57■□□□□ 0.08
LIG1-201ENST00000263274 VIRMAQ69YN4 1812 aaKnown RBP15.57■□□□□ 0.08
LIG1-201ENST00000263274 HSP90AB2PQ58FF8 381 aa15.57■□□□□ 0.08
LIG1-201ENST00000263274 RILPL2Q969X0 211 aa15.57■□□□□ 0.08
LIG1-201ENST00000263274 CHAMP1Q96JM3 812 aa15.57■□□□□ 0.08
LIG1-201ENST00000263274 NEURL4Q96JN8 1562 aa15.57■□□□□ 0.08
LIG1-201ENST00000263274 C14orf37Q86TY3 774 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.56■□□□□ 0.08
LIG1-201ENST00000263274 FRMPD1Q5SYB0 1578 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 NEXMIFQ5QGS0 1516 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 BAG4O95429 457 aaKnown RBP15.56■□□□□ 0.08
LIG1-201ENST00000263274 SDSP20132 328 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 TTC22Q5TAA0 569 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 LTV1Q96GA3 475 aaPredicted RBP15.56■□□□□ 0.08
LIG1-201ENST00000263274 EXOC6BQ9Y2D4 811 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 PRPF40AO75400 957 aaKnown RBP15.56■□□□□ 0.08
LIG1-201ENST00000263274 NASPP49321 788 aaPredicted RBP15.56■□□□□ 0.08
LIG1-201ENST00000263274 PKP1Q13835 747 aa15.56■□□□□ 0.08
LIG1-201ENST00000263274 HECW2Q9P2P5 1572 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 FOXO3O43524 673 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 ST18O60284 1047 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 RABEP1Q15276 862 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 TSPYL4Q9UJ04 414 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 NUTM2GQ5VZR2 741 aa15.55■□□□□ 0.08
LIG1-201ENST00000263274 DCTPP1Q9H773 170 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms