RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MEX3CQ5U5Q3 659 aaKnown RBP14.59□□□□□ -0.07
VPS4A-201ENST00000254950 AAMPQ13685 434 aa14.59□□□□□ -0.07
VPS4A-201ENST00000254950 NRXN1Q9ULB1 1477 aa14.58□□□□□ -0.08
VPS4A-201ENST00000254950 NUTM2BA6NNL0 878 aaPredicted RBP14.58□□□□□ -0.08
VPS4A-201ENST00000254950 NUTM2EB1AL46 878 aaPredicted RBP14.58□□□□□ -0.08
VPS4A-201ENST00000254950 AMOTQ4VCS5 1084 aa14.58□□□□□ -0.08
VPS4A-201ENST00000254950 DUSP27Q5VZP5 1158 aa14.58□□□□□ -0.08
VPS4A-201ENST00000254950 NUTM2AQ8IVF1 878 aaPredicted RBP14.58□□□□□ -0.08
VPS4A-201ENST00000254950 PRR36Q9H6K5 1346 aa14.58□□□□□ -0.08
VPS4A-201ENST00000254950 GCP02774 474 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 CASC1Q6TDU7 716 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 IFT57Q9NWB7 429 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 DCTN1Q14203 1278 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 CCDC30Q5VVM6 783 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 MCM10Q7L590 875 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 APBB1O00213 710 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 TMEM94Q12767 1356 aa14.57□□□□□ -0.08
VPS4A-201ENST00000254950 HSP90AA1P07900 732 aaKnown RBP14.56□□□□□ -0.08
VPS4A-201ENST00000254950 ANKRD24Q8TF21 1146 aa14.56□□□□□ -0.08
VPS4A-201ENST00000254950 HSP90AB1P08238 724 aaKnown RBP14.56□□□□□ -0.08
VPS4A-201ENST00000254950 SYTL4Q96C24 671 aaPredicted RBP14.56□□□□□ -0.08
VPS4A-201ENST00000254950 NPHP1O15259 732 aa14.56□□□□□ -0.08
VPS4A-201ENST00000254950 DDX58O95786 925 aaKnown RBP14.56□□□□□ -0.08
VPS4A-201ENST00000254950 CCDC27Q2M243 656 aa14.56□□□□□ -0.08
VPS4A-201ENST00000254950 NKTRP30414 1462 aaKnown RBP14.56□□□□□ -0.08
VPS4A-201ENST00000254950 IL16Q14005 1332 aa14.55□□□□□ -0.08
VPS4A-201ENST00000254950 KIAA1210Q9ULL0 1709 aa14.55□□□□□ -0.08
VPS4A-201ENST00000254950 FANCIQ9NVI1 1328 aa14.55□□□□□ -0.08
VPS4A-201ENST00000254950 TOM1O60784 492 aa14.55□□□□□ -0.08
VPS4A-201ENST00000254950 INSRP06213 1382 aa14.55□□□□□ -0.08
VPS4A-201ENST00000254950 CHRNA2Q15822 529 aa14.54□□□□□ -0.08
VPS4A-201ENST00000254950 AEBP1Q8IUX7 1158 aa14.54□□□□□ -0.08
VPS4A-201ENST00000254950 NEXNQ0ZGT2 675 aa14.54□□□□□ -0.08
VPS4A-201ENST00000254950 HDGFL1Q5TGJ6 251 aa14.53□□□□□ -0.08
VPS4A-201ENST00000254950 DDX54Q8TDD1 881 aaKnown RBP14.53□□□□□ -0.08
VPS4A-201ENST00000254950 SBNO1A3KN83 1393 aa14.53□□□□□ -0.08
VPS4A-201ENST00000254950 IP6K1Q92551 441 aa14.53□□□□□ -0.08
VPS4A-201ENST00000254950 HOXC9P31274 260 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 NOB1Q9ULX3 412 aaKnown RBP14.52□□□□□ -0.08
VPS4A-201ENST00000254950 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 CABP4P57796 275 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 ATF7IPQ6VMQ6 1270 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 DDRGK1Q96HY6 314 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 CFAP44Q96MT7 982 aa14.52□□□□□ -0.08
VPS4A-201ENST00000254950 IL13P35225 146 aa14.52□□□□□ -0.09
VPS4A-201ENST00000254950 SLAIN2Q9P270 581 aa14.52□□□□□ -0.09
VPS4A-201ENST00000254950 RARSP54136 660 aaKnown RBP14.51□□□□□ -0.09
VPS4A-201ENST00000254950 TAF7Q15545 349 aaPredicted RBP14.51□□□□□ -0.09
VPS4A-201ENST00000254950 CABLES1Q8TDN4 633 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 ADAMTS13Q76LX8 1427 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 RSPH6AQ9H0K4 717 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 SLC4A2P04920 1241 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 EYA1Q99502 592 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 USP6P35125 1406 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 PTPRMP28827 1452 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 DLC1Q96QB1 1528 aa14.51□□□□□ -0.09
VPS4A-201ENST00000254950 QRICH2Q9H0J4 1663 aa14.5□□□□□ -0.09
VPS4A-201ENST00000254950 BTBD11A6QL63 1104 aa14.5□□□□□ -0.09
VPS4A-201ENST00000254950 MROH2AA6NES4 1674 aa14.5□□□□□ -0.09
VPS4A-201ENST00000254950 LMTK3Q96Q04 1460 aa14.5□□□□□ -0.09
VPS4A-201ENST00000254950 MIS18AQ9NYP9 233 aa14.5□□□□□ -0.09
VPS4A-201ENST00000254950 C9orf78Q9NZ63 289 aaPredicted RBP14.5□□□□□ -0.09
VPS4A-201ENST00000254950 ANKARQ7Z5J8 1434 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 FAM83GA6ND36 823 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 UBAP1LF5GYI3 381 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 ADAMTS2O95450 1211 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 SSH1Q8WYL5 1049 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 ADGRB1O14514 1584 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 BECN1Q14457 450 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 PHACTR3Q96KR7 559 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 RIMS1Q86UR5 1692 aaKnown RBP14.49□□□□□ -0.09
VPS4A-201ENST00000254950 ALDH1L2Q3SY69 923 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 AATKQ6ZMQ8 1374 aa14.49□□□□□ -0.09
VPS4A-201ENST00000254950 SETD1BQ9UPS6 1966 aaKnown RBP14.48□□□□□ -0.09
VPS4A-201ENST00000254950 MPRIPQ6WCQ1 1025 aa14.48□□□□□ -0.09
VPS4A-201ENST00000254950 BLMP54132 1417 aaPredicted RBP14.47□□□□□ -0.09
VPS4A-201ENST00000254950 LRRC59Q96AG4 307 aaKnown RBP14.47□□□□□ -0.09
VPS4A-201ENST00000254950 CHMP3Q9Y3E7 222 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 TULP4Q9NRJ4 1543 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 PPLO60437 1756 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 KIF13AQ9H1H9 1805 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 IQGAP1P46940 1657 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 AIMP1Q12904 312 aaKnown RBP14.47□□□□□ -0.09
VPS4A-201ENST00000254950 RIC3Q7Z5B4 369 aa14.47□□□□□ -0.09
VPS4A-201ENST00000254950 PTCH1Q13635 1447 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 FER1L4A9Z1Z3 1794 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 CEP170BQ9Y4F5 1589 aaPredicted RBP14.46□□□□□ -0.09
VPS4A-201ENST00000254950 ARHGEF10O15013 1369 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 ANKRD45Q5TZF3 282 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 MVPQ14764 893 aaKnown RBP14.46□□□□□ -0.09
VPS4A-201ENST00000254950 MBIPQ9NS73 344 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 ADGRL3Q9HAR2 1447 aa14.46□□□□□ -0.09
VPS4A-201ENST00000254950 HTATSF1O43719 755 aaKnown RBP14.46□□□□□ -0.1
VPS4A-201ENST00000254950 MTHFSDQ2M296 383 aaKnown RBP14.45□□□□□ -0.1
VPS4A-201ENST00000254950 IFNL2Q8IZJ0 200 aa14.45□□□□□ -0.1
VPS4A-201ENST00000254950 DDX17Q92841 729 aaKnown RBP14.45□□□□□ -0.1
VPS4A-201ENST00000254950 GNAI3P08754 354 aa14.45□□□□□ -0.1
VPS4A-201ENST00000254950 NCBP3Q53F19 620 aaKnown RBP14.44□□□□□ -0.1
VPS4A-201ENST00000254950 TAF7LQ5H9L4 462 aa14.44□□□□□ -0.1
VPS4A-201ENST00000254950 ZNF335Q9H4Z2 1342 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms