RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CAMSAP1Q5T5Y3 1602 aa16.79■□□□□ 0.28
LDLR-201ENST00000252444 FAM161AQ3B820 660 aa16.79■□□□□ 0.28
LDLR-201ENST00000252444 TRIM6-TRIM34B2RNG4 842 aa16.79■□□□□ 0.28
LDLR-201ENST00000252444 ANKARQ7Z5J8 1434 aa16.79■□□□□ 0.28
LDLR-201ENST00000252444 NEURL4Q96JN8 1562 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 DIP2CQ9Y2E4 1556 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 GOLGA6L6A8MZA4 724 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 TAF7Q15545 349 aaPredicted RBP16.78■□□□□ 0.28
LDLR-201ENST00000252444 HDGFL1Q5TGJ6 251 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 NME9Q86XW9 330 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 ZNF652Q9Y2D9 606 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 TESK2Q96S53 571 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 CRBNQ96SW2 442 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 STRN4Q9NRL3 753 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 PLA2R1Q13018 1463 aa16.78■□□□□ 0.28
LDLR-201ENST00000252444 RNF17Q9BXT8 1623 aaKnown RBP16.78■□□□□ 0.28
LDLR-201ENST00000252444 LRRC59Q96AG4 307 aaKnown RBP16.77■□□□□ 0.28
LDLR-201ENST00000252444 SYTL4Q96C24 671 aaPredicted RBP16.77■□□□□ 0.28
LDLR-201ENST00000252444 GBP4Q96PP9 640 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 SETBP1Q9Y6X0 1596 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 A0A087WZG4 1122 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 SLFN5Q08AF3 891 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 RNF20Q5VTR2 975 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 DIP2BQ9P265 1576 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 KIF24Q5T7B8 1368 aa16.77■□□□□ 0.28
LDLR-201ENST00000252444 PTPRCP08575 1304 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 PLEKHG3A1L390 1219 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 BTBD11A6QL63 1104 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 GNAI2P04899 355 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 IFNL2Q8IZJ0 200 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 MAP3K4Q9Y6R4 1608 aa16.77■□□□□ 0.27
LDLR-201ENST00000252444 SRCIN1Q9C0H9 1055 aa16.76■□□□□ 0.27
LDLR-201ENST00000252444 EXOSC9Q06265 439 aaKnown RBP16.75■□□□□ 0.27
LDLR-201ENST00000252444 PHF23Q9BUL5 403 aaPredicted RBP16.75■□□□□ 0.27
LDLR-201ENST00000252444 DIAPH3Q9NSV4 1193 aa16.75■□□□□ 0.27
LDLR-201ENST00000252444 SBNO1A3KN83 1393 aa16.75■□□□□ 0.27
LDLR-201ENST00000252444 FRAT2O75474 233 aaPredicted RBP16.74■□□□□ 0.27
LDLR-201ENST00000252444 CDK11BP21127 795 aaKnown RBP16.74■□□□□ 0.27
LDLR-201ENST00000252444 NOP58Q9Y2X3 529 aaKnown RBP16.74■□□□□ 0.27
LDLR-201ENST00000252444 TMOD3Q9NYL9 352 aa16.74■□□□□ 0.27
LDLR-201ENST00000252444 COG6Q9Y2V7 657 aa16.74■□□□□ 0.27
LDLR-201ENST00000252444 SENP3-EIF4A1A0A087X0R7 540 aa16.74■□□□□ 0.27
LDLR-201ENST00000252444 RRS1Q15050 365 aaKnown RBP16.74■□□□□ 0.27
LDLR-201ENST00000252444 ANKRD45Q5TZF3 282 aa16.74■□□□□ 0.27
LDLR-201ENST00000252444 INTS3Q68E01 1043 aaKnown RBP16.74■□□□□ 0.27
LDLR-201ENST00000252444 AMER1Q5JTC6 1135 aaPredicted RBP16.73■□□□□ 0.27
LDLR-201ENST00000252444 GOLGA6L4A6NEF3 574 aa16.73■□□□□ 0.27
LDLR-201ENST00000252444 RPAP2Q8IXW5 612 aaPredicted RBP16.73■□□□□ 0.27
LDLR-201ENST00000252444 HYPKQ9NX55 129 aa16.73■□□□□ 0.27
LDLR-201ENST00000252444 ELL2O00472 640 aaPredicted RBP16.72■□□□□ 0.27
LDLR-201ENST00000252444 ATF7IPQ6VMQ6 1270 aa16.72■□□□□ 0.27
LDLR-201ENST00000252444 SMARCC1Q92922 1105 aaPredicted RBP16.72■□□□□ 0.27
LDLR-201ENST00000252444 RBM33Q96EV2 1170 aaKnown RBP16.72■□□□□ 0.27
LDLR-201ENST00000252444 GNL3LQ9NVN8 582 aaKnown RBP16.72■□□□□ 0.27
LDLR-201ENST00000252444 NCKAP5LQ9HCH0 1330 aa16.72■□□□□ 0.27
LDLR-201ENST00000252444 SYAP1Q96A49 352 aaPredicted RBP16.72■□□□□ 0.27
LDLR-201ENST00000252444 RTL1A6NKG5 1358 aa16.71■□□□□ 0.27
LDLR-201ENST00000252444 A0A1W2PP64 1363 aa16.71■□□□□ 0.27
LDLR-201ENST00000252444 PLEKHH1Q9ULM0 1364 aa16.71■□□□□ 0.27
LDLR-201ENST00000252444 FOXO3O43524 673 aa16.71■□□□□ 0.27
LDLR-201ENST00000252444 NRDCO43847 1150 aa16.71■□□□□ 0.27
LDLR-201ENST00000252444 EXOC5O00471 708 aa16.71■□□□□ 0.26
LDLR-201ENST00000252444 FYB1O15117 783 aa16.71■□□□□ 0.26
LDLR-201ENST00000252444 ZKSCAN1P17029 563 aaPredicted RBP16.71■□□□□ 0.26
LDLR-201ENST00000252444 CPLX2Q6PUV4 134 aaKnown RBP16.7■□□□□ 0.26
LDLR-201ENST00000252444 FMNL2Q96PY5 1086 aa16.7■□□□□ 0.26
LDLR-201ENST00000252444 LARP1Q6PKG0 1096 aaKnown RBP16.7■□□□□ 0.26
LDLR-201ENST00000252444 ANKRD24Q8TF21 1146 aa16.7■□□□□ 0.26
LDLR-201ENST00000252444 REREQ9P2R6 1566 aa16.7■□□□□ 0.26
LDLR-201ENST00000252444 LMTK3Q96Q04 1460 aa16.7■□□□□ 0.26
LDLR-201ENST00000252444 GNL2Q13823 731 aaKnown RBP16.7■□□□□ 0.26
LDLR-201ENST00000252444 CLASRPQ8N2M8 674 aaKnown RBP16.69■□□□□ 0.26
LDLR-201ENST00000252444 ATP6V1DQ9Y5K8 247 aa16.69■□□□□ 0.26
LDLR-201ENST00000252444 CLTCL1P53675 1640 aa16.69■□□□□ 0.26
LDLR-201ENST00000252444 ARHGAP45Q92619 1136 aa16.69■□□□□ 0.26
LDLR-201ENST00000252444 EXOC6Q8TAG9 804 aa16.69■□□□□ 0.26
LDLR-201ENST00000252444 MVPQ14764 893 aaKnown RBP16.68■□□□□ 0.26
LDLR-201ENST00000252444 AKAP4Q5JQC9 854 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 LRRIQ1Q96JM4 1722 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 APBB1O00213 710 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 ZSCAN25Q6NSZ9 544 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 VPS37DQ86XT2 251 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 CNTROBQ8N137 903 aa16.68■□□□□ 0.26
LDLR-201ENST00000252444 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
LDLR-201ENST00000252444 RAB11FIP3O75154 756 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 DLC1Q96QB1 1528 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 SYNE3Q6ZMZ3 975 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 IP6K1Q92551 441 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 NUTM2BA6NNL0 878 aaPredicted RBP16.67■□□□□ 0.26
LDLR-201ENST00000252444 NUTM2EB1AL46 878 aaPredicted RBP16.67■□□□□ 0.26
LDLR-201ENST00000252444 ZC3H6P61129 1189 aaKnown RBP16.67■□□□□ 0.26
LDLR-201ENST00000252444 PIP4K2BP78356 416 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 NUTM2AQ8IVF1 878 aaPredicted RBP16.67■□□□□ 0.26
LDLR-201ENST00000252444 AATKQ6ZMQ8 1374 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 DIP2AQ14689 1571 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 MSH5O43196 834 aa16.67■□□□□ 0.26
LDLR-201ENST00000252444 CDC45O75419 566 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 SLC4A2P04920 1241 aa16.66■□□□□ 0.26
LDLR-201ENST00000252444 NAP1L2Q9ULW6 460 aaPredicted RBP16.66■□□□□ 0.26
LDLR-201ENST00000252444 DCAF8L1A6NGE4 600 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms