RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 BCL2L13Q9BXK5 485 aa24.68■■□□□ 1.54
YBX3-201ENST00000228251 TTC21AQ8NDW8 1320 aa24.68■■□□□ 1.54
YBX3-201ENST00000228251 IGHDP01880 384 aa24.67■■□□□ 1.54
YBX3-201ENST00000228251 SETD1BQ9UPS6 1966 aaKnown RBP24.66■■□□□ 1.54
YBX3-201ENST00000228251 NUTM2FA1L443 756 aa24.65■■□□□ 1.54
YBX3-201ENST00000228251 SSH1Q8WYL5 1049 aa24.65■■□□□ 1.54
YBX3-201ENST00000228251 VIRMAQ69YN4 1812 aaKnown RBP24.65■■□□□ 1.54
YBX3-201ENST00000228251 KCNA6P17658 529 aa24.64■■□□□ 1.53
YBX3-201ENST00000228251 ZNF853P0CG23 659 aa24.63■■□□□ 1.53
YBX3-201ENST00000228251 ZKSCAN2Q63HK3 967 aa24.63■■□□□ 1.53
YBX3-201ENST00000228251 NEFMP07197 916 aa24.62■■□□□ 1.53
YBX3-201ENST00000228251 EIF4A2Q14240 407 aaKnown RBP24.62■■□□□ 1.53
YBX3-201ENST00000228251 BRPF1P55201 1214 aaPredicted RBP24.6■■□□□ 1.53
YBX3-201ENST00000228251 MVPQ14764 893 aaKnown RBP24.6■■□□□ 1.53
YBX3-201ENST00000228251 SMC4Q9NTJ3 1288 aa24.6■■□□□ 1.53
YBX3-201ENST00000228251 ALDH1L2Q3SY69 923 aa24.59■■□□□ 1.53
YBX3-201ENST00000228251 PCDHB15Q9Y5E8 787 aa24.59■■□□□ 1.53
YBX3-201ENST00000228251 ANP32AP39687 249 aaKnown RBP24.59■■□□□ 1.53
YBX3-201ENST00000228251 CALD1Q05682 793 aaKnown RBP24.59■■□□□ 1.53
YBX3-201ENST00000228251 IFT57Q9NWB7 429 aa24.59■■□□□ 1.53
YBX3-201ENST00000228251 TRIM27P14373 513 aa24.58■■□□□ 1.53
YBX3-201ENST00000228251 DZIP1LQ8IYY4 767 aaKnown RBP24.58■■□□□ 1.53
YBX3-201ENST00000228251 PMFBP1Q8TBY8 1022 aa24.58■■□□□ 1.53
YBX3-201ENST00000228251 ZNF428Q96B54 188 aa24.58■■□□□ 1.53
YBX3-201ENST00000228251 IPO9Q96P70 1041 aaKnown RBP24.57■■□□□ 1.52
YBX3-201ENST00000228251 ATF7IPQ6VMQ6 1270 aa24.56■■□□□ 1.52
YBX3-201ENST00000228251 THUMPD2Q9BTF0 503 aaKnown RBP24.56■■□□□ 1.52
YBX3-201ENST00000228251 LMOD3Q0VAK6 560 aa24.55■■□□□ 1.52
YBX3-201ENST00000228251 SBNO1A3KN83 1393 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 GNAI1P63096 354 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 C8orf34Q49A92 452 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 ANKLE2Q86XL3 938 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 AEBP1Q8IUX7 1158 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 KIF16BQ96L93 1317 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 ARHGEF10O15013 1369 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 MAP3K19Q56UN5 1328 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 HSP90AB2PQ58FF8 381 aa24.54■■□□□ 1.52
YBX3-201ENST00000228251 NGDNQ8NEJ9 315 aaKnown RBP24.53■■□□□ 1.52
YBX3-201ENST00000228251 NOB1Q9ULX3 412 aaKnown RBP24.52■■□□□ 1.52
YBX3-201ENST00000228251 FLT4P35916 1363 aa24.52■■□□□ 1.52
YBX3-201ENST00000228251 VAMP4O75379 141 aa24.52■■□□□ 1.52
YBX3-201ENST00000228251 CFAP44Q96MT7 982 aa24.52■■□□□ 1.52
YBX3-201ENST00000228251 KDRP35968 1356 aa24.51■■□□□ 1.51
YBX3-201ENST00000228251 FAM161AQ3B820 660 aa24.51■■□□□ 1.51
YBX3-201ENST00000228251 SULT6B1Q6IMI4 303 aa24.51■■□□□ 1.51
YBX3-201ENST00000228251 MBIPQ9NS73 344 aa24.51■■□□□ 1.51
YBX3-201ENST00000228251 NOP58Q9Y2X3 529 aaKnown RBP24.51■■□□□ 1.51
YBX3-201ENST00000228251 FTSJ3Q8IY81 847 aaKnown RBP24.5■■□□□ 1.51
YBX3-201ENST00000228251 KIF24Q5T7B8 1368 aa24.49■■□□□ 1.51
YBX3-201ENST00000228251 MYT1Q01538 1121 aa24.49■■□□□ 1.51
YBX3-201ENST00000228251 ADGRL3Q9HAR2 1447 aa24.49■■□□□ 1.51
YBX3-201ENST00000228251 NWD1Q149M9 1564 aa24.49■■□□□ 1.51
YBX3-201ENST00000228251 DDX19BQ9UMR2 479 aa24.48■■□□□ 1.51
YBX3-201ENST00000228251 FAM83GA6ND36 823 aa24.47■■□□□ 1.51
YBX3-201ENST00000228251 PAK3O75914 559 aaPredicted RBP24.47■■□□□ 1.51
YBX3-201ENST00000228251 RGS3P49796 1198 aa24.47■■□□□ 1.51
YBX3-201ENST00000228251 TSPYL6Q8N831 410 aa24.47■■□□□ 1.51
YBX3-201ENST00000228251 IPO8O15397 1037 aaKnown RBP24.47■■□□□ 1.51
YBX3-201ENST00000228251 MRPL50Q8N5N7 158 aaKnown RBP24.47■■□□□ 1.51
YBX3-201ENST00000228251 LAS1LQ9Y4W2 734 aaKnown RBP24.46■■□□□ 1.51
YBX3-201ENST00000228251 TMEM57Q8N5G2 664 aa24.45■■□□□ 1.5
YBX3-201ENST00000228251 NPHP4O75161 1426 aaPredicted RBP24.45■■□□□ 1.5
YBX3-201ENST00000228251 IGSF1Q8N6C5 1336 aa24.45■■□□□ 1.5
YBX3-201ENST00000228251 ARHGAP45Q92619 1136 aa24.44■■□□□ 1.5
YBX3-201ENST00000228251 RWDD1Q9H446 243 aaPredicted RBP24.44■■□□□ 1.5
YBX3-201ENST00000228251 LRRC37A3O60309 1634 aa24.44■■□□□ 1.5
YBX3-201ENST00000228251 ZBTB40Q9NUA8 1239 aa24.44■■□□□ 1.5
YBX3-201ENST00000228251 LTN1O94822 1766 aa24.44■■□□□ 1.5
YBX3-201ENST00000228251 HDAC1Q13547 482 aaPredicted RBP24.43■■□□□ 1.5
YBX3-201ENST00000228251 CRB1P82279 1406 aa24.42■■□□□ 1.5
YBX3-201ENST00000228251 DCTN1Q14203 1278 aa24.42■■□□□ 1.5
YBX3-201ENST00000228251 C8orf58Q8NAV2 365 aa24.42■■□□□ 1.5
YBX3-201ENST00000228251 PHRF1Q9P1Y6 1649 aaKnown RBP24.42■■□□□ 1.5
YBX3-201ENST00000228251 ERICH6Q7L0X2 663 aa24.41■■□□□ 1.5
YBX3-201ENST00000228251 ITPRIPQ8IWB1 547 aa24.41■■□□□ 1.5
YBX3-201ENST00000228251 NFAT5O94916 1531 aa24.41■■□□□ 1.5
YBX3-201ENST00000228251 CHL1O00533 1208 aa24.4■■□□□ 1.5
YBX3-201ENST00000228251 TWISTNBQ3B726 338 aaPredicted RBP24.4■■□□□ 1.5
YBX3-201ENST00000228251 PDZRN3Q9UPQ7 1066 aa24.4■■□□□ 1.5
YBX3-201ENST00000228251 SOX12O15370 315 aa24.39■■□□□ 1.5
YBX3-201ENST00000228251 NLRP6P59044 892 aa24.39■■□□□ 1.5
YBX3-201ENST00000228251 NPM2Q86SE8 214 aaKnown RBP24.39■■□□□ 1.5
YBX3-201ENST00000228251 PHF8Q9UPP1 1060 aa24.39■■□□□ 1.5
YBX3-201ENST00000228251 EYA1Q99502 592 aa24.38■■□□□ 1.49
YBX3-201ENST00000228251 ABCC4O15439 1325 aa24.38■■□□□ 1.49
YBX3-201ENST00000228251 KIAA0232Q92628 1395 aa24.38■■□□□ 1.49
YBX3-201ENST00000228251 ZBTB47Q9UFB7 747 aaPredicted RBP24.37■■□□□ 1.49
YBX3-201ENST00000228251 RTL1A6NKG5 1358 aa24.36■■□□□ 1.49
YBX3-201ENST00000228251 HOXC9P31274 260 aa24.36■■□□□ 1.49
YBX3-201ENST00000228251 AMPHP49418 695 aa24.35■■□□□ 1.49
YBX3-201ENST00000228251 SMC5Q8IY18 1101 aa24.35■■□□□ 1.49
YBX3-201ENST00000228251 MTHFSDQ2M296 383 aaKnown RBP24.34■■□□□ 1.49
YBX3-201ENST00000228251 MCM10Q7L590 875 aa24.33■■□□□ 1.49
YBX3-201ENST00000228251 ABTB2Q8N961 1025 aa24.33■■□□□ 1.49
YBX3-201ENST00000228251 ELL2O00472 640 aaPredicted RBP24.32■■□□□ 1.48
YBX3-201ENST00000228251 ZBTB7BO15156 539 aaPredicted RBP24.32■■□□□ 1.48
YBX3-201ENST00000228251 TRPM3Q9HCF6 1732 aaPredicted RBP24.32■■□□□ 1.48
YBX3-201ENST00000228251 RGS12O14924 1447 aa24.31■■□□□ 1.48
YBX3-201ENST00000228251 USP19O94966 1318 aa24.31■■□□□ 1.48
YBX3-201ENST00000228251 FOXO3O43524 673 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms