RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 GSPT1P15170 499 aaKnown RBP15.46■□□□□ 0.07
NUP88-201ENST00000225696 CDK19Q9BWU1 502 aa15.46■□□□□ 0.07
NUP88-201ENST00000225696 CIZ1Q9ULV3 898 aaPredicted RBP15.46■□□□□ 0.07
NUP88-201ENST00000225696 PIK3C2BO00750 1634 aa15.46■□□□□ 0.07
NUP88-201ENST00000225696 GBP4Q96PP9 640 aa15.46■□□□□ 0.07
NUP88-201ENST00000225696 MLH3Q9UHC1 1453 aa15.46■□□□□ 0.06
NUP88-201ENST00000225696 BRPF1P55201 1214 aaPredicted RBP15.45■□□□□ 0.06
NUP88-201ENST00000225696 GCC1Q96CN9 775 aa15.45■□□□□ 0.06
NUP88-201ENST00000225696 MBIPQ9NS73 344 aa15.45■□□□□ 0.06
NUP88-201ENST00000225696 FAM135BQ49AJ0 1406 aa15.45■□□□□ 0.06
NUP88-201ENST00000225696 AK9Q5TCS8 1911 aa15.45■□□□□ 0.06
NUP88-201ENST00000225696 C16orf71Q8IYS4 520 aaPredicted RBP15.45■□□□□ 0.06
NUP88-201ENST00000225696 C8orf58Q8NAV2 365 aa15.45■□□□□ 0.06
NUP88-201ENST00000225696 FAM69CQ0P6D2 419 aa15.44■□□□□ 0.06
NUP88-201ENST00000225696 EMILIN1Q9Y6C2 1016 aa15.44■□□□□ 0.06
NUP88-201ENST00000225696 FAM83GA6ND36 823 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 PIK3R4Q99570 1358 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 ANKRD26Q9UPS8 1709 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 NFE2L2Q16236 605 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 ZRANB1Q9UGI0 708 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 ABCC4O15439 1325 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 MYO5BQ9ULV0 1848 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 PTCH1Q13635 1447 aa15.43■□□□□ 0.06
NUP88-201ENST00000225696 PKP1Q13835 747 aa15.42■□□□□ 0.06
NUP88-201ENST00000225696 HDGFL2Q7Z4V5 671 aaPredicted RBP15.42■□□□□ 0.06
NUP88-201ENST00000225696 OTUD7AQ8TE49 926 aaPredicted RBP15.42■□□□□ 0.06
NUP88-201ENST00000225696 YTHDC2Q9H6S0 1430 aaKnown RBP15.42■□□□□ 0.06
NUP88-201ENST00000225696 DCTN1Q14203 1278 aa15.42■□□□□ 0.06
NUP88-201ENST00000225696 PLEKHM2Q8IWE5 1019 aa15.42■□□□□ 0.06
NUP88-201ENST00000225696 ISY1Q9ULR0 285 aaKnown RBP15.42■□□□□ 0.06
NUP88-201ENST00000225696 ARHGAP45Q92619 1136 aa15.41■□□□□ 0.06
NUP88-201ENST00000225696 BAG4O95429 457 aaKnown RBP15.41■□□□□ 0.06
NUP88-201ENST00000225696 ZNF853P0CG23 659 aa15.41■□□□□ 0.06
NUP88-201ENST00000225696 TWISTNBQ3B726 338 aaPredicted RBP15.41■□□□□ 0.06
NUP88-201ENST00000225696 WAPLQ7Z5K2 1190 aa15.41■□□□□ 0.06
NUP88-201ENST00000225696 CDC45O75419 566 aa15.4■□□□□ 0.06
NUP88-201ENST00000225696 SKOR2Q2VWA4 1001 aaPredicted RBP15.4■□□□□ 0.06
NUP88-201ENST00000225696 FBXO31Q5XUX0 539 aaPredicted RBP15.4■□□□□ 0.06
NUP88-201ENST00000225696 TRIM44Q96DX7 344 aaPredicted RBP15.4■□□□□ 0.06
NUP88-201ENST00000225696 ZNF428Q96B54 188 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 KNDC1Q76NI1 1749 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 ARHGEF40Q8TER5 1519 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 IL13P35225 146 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 KRT24Q2M2I5 525 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 CHAMP1Q96JM3 812 aa15.39■□□□□ 0.05
NUP88-201ENST00000225696 CDC42BPGQ6DT37 1551 aa15.38■□□□□ 0.05
NUP88-201ENST00000225696 ZFYVE9O95405 1425 aa15.38■□□□□ 0.05
NUP88-201ENST00000225696 IFT57Q9NWB7 429 aa15.38■□□□□ 0.05
NUP88-201ENST00000225696 DDX49Q9Y6V7 483 aaKnown RBP15.38■□□□□ 0.05
NUP88-201ENST00000225696 GNAI1P63096 354 aa15.38■□□□□ 0.05
NUP88-201ENST00000225696 RICTORQ6R327 1708 aa15.37■□□□□ 0.05
NUP88-201ENST00000225696 APBB1O00213 710 aa15.37■□□□□ 0.05
NUP88-201ENST00000225696 NASPP49321 788 aaPredicted RBP15.37■□□□□ 0.05
NUP88-201ENST00000225696 NME9Q86XW9 330 aa15.37■□□□□ 0.05
NUP88-201ENST00000225696 KIF13AQ9H1H9 1805 aa15.37■□□□□ 0.05
NUP88-201ENST00000225696 SMARCA5O60264 1052 aaPredicted RBP15.36■□□□□ 0.05
NUP88-201ENST00000225696 MCTP1Q6DN14 999 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 CLEC17AQ6ZS10 378 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 MAP2P11137 1827 aaKnown RBP15.36■□□□□ 0.05
NUP88-201ENST00000225696 NCKAP5LQ9HCH0 1330 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 CLTCQ00610 1675 aaKnown RBP15.36■□□□□ 0.05
NUP88-201ENST00000225696 RRS1Q15050 365 aaKnown RBP15.36■□□□□ 0.05
NUP88-201ENST00000225696 KLHL40Q2TBA0 621 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 USP26Q9BXU7 913 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 DCTPP1Q9H773 170 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 SLC52A1Q9NWF4 448 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 KIF20BQ96Q89 1820 aa15.36■□□□□ 0.05
NUP88-201ENST00000225696 HSP90AA2PQ14568 343 aaPredicted RBP15.35■□□□□ 0.05
NUP88-201ENST00000225696 TTC22Q5TAA0 569 aa15.35■□□□□ 0.05
NUP88-201ENST00000225696 ZGPATQ8N5A5 531 aaKnown RBP15.35■□□□□ 0.05
NUP88-201ENST00000225696 CFAP44Q96MT7 982 aa15.35■□□□□ 0.05
NUP88-201ENST00000225696 TMEM131LA2VDJ0 1609 aa15.34■□□□□ 0.05
NUP88-201ENST00000225696 CAVIN1Q6NZI2 390 aaKnown RBP15.34■□□□□ 0.05
NUP88-201ENST00000225696 AEBP2Q6ZN18 517 aaPredicted RBP15.34■□□□□ 0.05
NUP88-201ENST00000225696 PPP1R9BQ96SB3 815 aa15.34■□□□□ 0.05
NUP88-201ENST00000225696 CYP2E1P05181 493 aaPredicted RBP15.34■□□□□ 0.05
NUP88-201ENST00000225696 NCLP19338 710 aaKnown RBP15.34■□□□□ 0.05
NUP88-201ENST00000225696 LMBRD1Q9NUN5 540 aa15.34■□□□□ 0.05
NUP88-201ENST00000225696 ARHGAP31Q2M1Z3 1444 aa15.33■□□□□ 0.04
NUP88-201ENST00000225696 SDSP20132 328 aa15.33■□□□□ 0.04
NUP88-201ENST00000225696 YEATS2Q9ULM3 1422 aa15.33■□□□□ 0.04
NUP88-201ENST00000225696 ALKQ9UM73 1620 aa15.33■□□□□ 0.04
NUP88-201ENST00000225696 RABEP1Q15276 862 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 CHMP4BQ9H444 224 aaKnown RBP15.32■□□□□ 0.04
NUP88-201ENST00000225696 ZDHHC9Q9Y397 364 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 DIP2CQ9Y2E4 1556 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 GOLGA6L22H0YM25 854 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 CCDC173Q0VFZ6 552 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 ZSCAN23Q3MJ62 389 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 API5Q9BZZ5 524 aaKnown RBP15.32■□□□□ 0.04
NUP88-201ENST00000225696 DNAJC5Q9H3Z4 198 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 RBM27Q9P2N5 1060 aaKnown RBP15.32■□□□□ 0.04
NUP88-201ENST00000225696 ATP10DQ9P241 1426 aa15.32■□□□□ 0.04
NUP88-201ENST00000225696 DLG5Q8TDM6 1919 aa15.31■□□□□ 0.04
NUP88-201ENST00000225696 CALD1Q05682 793 aaKnown RBP15.31■□□□□ 0.04
NUP88-201ENST00000225696 AEBP1Q8IUX7 1158 aa15.31■□□□□ 0.04
NUP88-201ENST00000225696 RBSNQ9H1K0 784 aa15.31■□□□□ 0.04
NUP88-201ENST00000225696 PTMSP20962 102 aa15.31■□□□□ 0.04
NUP88-201ENST00000225696 RIMS2Q9UQ26 1411 aa15.3■□□□□ 0.04
NUP88-201ENST00000225696 CEP85Q6P2H3 762 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms