RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 MLH3Q9UHC1 1453 aa17.48■□□□□ 0.39
USH1C-201ENST00000005226 K7ELQ4 463 aaPredicted RBP17.48■□□□□ 0.39
USH1C-201ENST00000005226 APBB1O00213 710 aa17.48■□□□□ 0.39
USH1C-201ENST00000005226 GBP4Q96PP9 640 aa17.48■□□□□ 0.39
USH1C-201ENST00000005226 LRRC7Q96NW7 1537 aa17.47■□□□□ 0.39
USH1C-201ENST00000005226 PTPRMP28827 1452 aa17.47■□□□□ 0.39
USH1C-201ENST00000005226 GSPT1P15170 499 aaKnown RBP17.47■□□□□ 0.39
USH1C-201ENST00000005226 TWISTNBQ3B726 338 aaPredicted RBP17.47■□□□□ 0.39
USH1C-201ENST00000005226 YTHDC2Q9H6S0 1430 aaKnown RBP17.46■□□□□ 0.39
USH1C-201ENST00000005226 NME9Q86XW9 330 aa17.46■□□□□ 0.39
USH1C-201ENST00000005226 ESPNB1AK53 854 aa17.45■□□□□ 0.38
USH1C-201ENST00000005226 KRT24Q2M2I5 525 aa17.45■□□□□ 0.38
USH1C-201ENST00000005226 OTUD7AQ8TE49 926 aaPredicted RBP17.45■□□□□ 0.38
USH1C-201ENST00000005226 NCKAP5LQ9HCH0 1330 aa17.45■□□□□ 0.38
USH1C-201ENST00000005226 PIK3C2BO00750 1634 aa17.45■□□□□ 0.38
USH1C-201ENST00000005226 RRS1Q15050 365 aaKnown RBP17.44■□□□□ 0.38
USH1C-201ENST00000005226 STAG3Q9UJ98 1225 aa17.44■□□□□ 0.38
USH1C-201ENST00000005226 CIZ1Q9ULV3 898 aaPredicted RBP17.44■□□□□ 0.38
USH1C-201ENST00000005226 FAM135BQ49AJ0 1406 aa17.44■□□□□ 0.38
USH1C-201ENST00000005226 GNAI1P63096 354 aa17.43■□□□□ 0.38
USH1C-201ENST00000005226 SLC52A1Q9NWF4 448 aa17.43■□□□□ 0.38
USH1C-201ENST00000005226 PLEKHM2Q8IWE5 1019 aa17.43■□□□□ 0.38
USH1C-201ENST00000005226 CDC45O75419 566 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 BRPF1P55201 1214 aaPredicted RBP17.42■□□□□ 0.38
USH1C-201ENST00000005226 MED14O60244 1454 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 ABCC4O15439 1325 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 SMARCA5O60264 1052 aaPredicted RBP17.42■□□□□ 0.38
USH1C-201ENST00000005226 IL13P35225 146 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 ARHGAP45Q92619 1136 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 TRIM44Q96DX7 344 aaPredicted RBP17.42■□□□□ 0.38
USH1C-201ENST00000005226 MYO5BQ9ULV0 1848 aa17.42■□□□□ 0.38
USH1C-201ENST00000005226 PKP1Q13835 747 aa17.41■□□□□ 0.38
USH1C-201ENST00000005226 IFT57Q9NWB7 429 aa17.41■□□□□ 0.38
USH1C-201ENST00000005226 CFAP74Q9C0B2 1584 aa17.41■□□□□ 0.38
USH1C-201ENST00000005226 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
USH1C-201ENST00000005226 NCLP19338 710 aaKnown RBP17.41■□□□□ 0.38
USH1C-201ENST00000005226 AK9Q5TCS8 1911 aa17.4■□□□□ 0.38
USH1C-201ENST00000005226 BAG4O95429 457 aaKnown RBP17.4■□□□□ 0.38
USH1C-201ENST00000005226 CHAMP1Q96JM3 812 aa17.4■□□□□ 0.38
USH1C-201ENST00000005226 DDX49Q9Y6V7 483 aaKnown RBP17.4■□□□□ 0.38
USH1C-201ENST00000005226 ZNF428Q96B54 188 aa17.4■□□□□ 0.38
USH1C-201ENST00000005226 PTCH1Q13635 1447 aa17.39■□□□□ 0.37
USH1C-201ENST00000005226 SKOR2Q2VWA4 1001 aaPredicted RBP17.39■□□□□ 0.37
USH1C-201ENST00000005226 MCTP1Q6DN14 999 aa17.39■□□□□ 0.37
USH1C-201ENST00000005226 YEATS2Q9ULM3 1422 aa17.39■□□□□ 0.37
USH1C-201ENST00000005226 PIK3R4Q99570 1358 aa17.38■□□□□ 0.37
USH1C-201ENST00000005226 CFAP44Q96MT7 982 aa17.38■□□□□ 0.37
USH1C-201ENST00000005226 ARHGEF40Q8TER5 1519 aa17.38■□□□□ 0.37
USH1C-201ENST00000005226 ZFYVE9O95405 1425 aa17.37■□□□□ 0.37
USH1C-201ENST00000005226 AEBP1Q8IUX7 1158 aa17.37■□□□□ 0.37
USH1C-201ENST00000005226 API5Q9BZZ5 524 aaKnown RBP17.37■□□□□ 0.37
USH1C-201ENST00000005226 CHMP4BQ9H444 224 aaKnown RBP17.37■□□□□ 0.37
USH1C-201ENST00000005226 DCTPP1Q9H773 170 aa17.37■□□□□ 0.37
USH1C-201ENST00000005226 CALD1Q05682 793 aaKnown RBP17.36■□□□□ 0.37
USH1C-201ENST00000005226 TTC22Q5TAA0 569 aa17.36■□□□□ 0.37
USH1C-201ENST00000005226 ANKRD26Q9UPS8 1709 aa17.36■□□□□ 0.37
USH1C-201ENST00000005226 USP26Q9BXU7 913 aa17.36■□□□□ 0.37
USH1C-201ENST00000005226 FOXD4L5Q5VV16 416 aaPredicted RBP17.35■□□□□ 0.37
USH1C-201ENST00000005226 ZGPATQ8N5A5 531 aaKnown RBP17.35■□□□□ 0.37
USH1C-201ENST00000005226 FOXD4L4Q8WXT5 416 aaPredicted RBP17.35■□□□□ 0.37
USH1C-201ENST00000005226 MAP2P11137 1827 aaKnown RBP17.35■□□□□ 0.37
USH1C-201ENST00000005226 NASPP49321 788 aaPredicted RBP17.34■□□□□ 0.37
USH1C-201ENST00000005226 MCM10Q7L590 875 aa17.34■□□□□ 0.37
USH1C-201ENST00000005226 ISY1Q9ULR0 285 aaKnown RBP17.34■□□□□ 0.37
USH1C-201ENST00000005226 GOLGA6L22H0YM25 854 aa17.34■□□□□ 0.37
USH1C-201ENST00000005226 SDSP20132 328 aa17.34■□□□□ 0.37
USH1C-201ENST00000005226 CAVIN1Q6NZI2 390 aaKnown RBP17.34■□□□□ 0.37
USH1C-201ENST00000005226 MIS18AQ9NYP9 233 aa17.34■□□□□ 0.37
USH1C-201ENST00000005226 TXNDC2Q86VQ3 553 aa17.33■□□□□ 0.36
USH1C-201ENST00000005226 ALKQ9UM73 1620 aa17.33■□□□□ 0.36
USH1C-201ENST00000005226 ARHGAP31Q2M1Z3 1444 aa17.33■□□□□ 0.36
USH1C-201ENST00000005226 DIP2CQ9Y2E4 1556 aa17.32■□□□□ 0.36
USH1C-201ENST00000005226 TMEM131LA2VDJ0 1609 aa17.32■□□□□ 0.36
USH1C-201ENST00000005226 RABEP1Q15276 862 aa17.32■□□□□ 0.36
USH1C-201ENST00000005226 MEIS3Q99687 375 aa17.32■□□□□ 0.36
USH1C-201ENST00000005226 RBM27Q9P2N5 1060 aaKnown RBP17.32■□□□□ 0.36
USH1C-201ENST00000005226 KLHL40Q2TBA0 621 aa17.32■□□□□ 0.36
USH1C-201ENST00000005226 KIF20BQ96Q89 1820 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 KNDC1Q76NI1 1749 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 SOX12O15370 315 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 SULT6B1Q6IMI4 303 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 PRPF40AO75400 957 aaKnown RBP17.31■□□□□ 0.36
USH1C-201ENST00000005226 TSHZ3Q63HK5 1081 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 CEP85Q6P2H3 762 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 ANKRD44Q8N8A2 993 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 COG3Q96JB2 828 aa17.31■□□□□ 0.36
USH1C-201ENST00000005226 RIMS2Q9UQ26 1411 aa17.3■□□□□ 0.36
USH1C-201ENST00000005226 CDC42BPGQ6DT37 1551 aa17.3■□□□□ 0.36
USH1C-201ENST00000005226 NUTM2FA1L443 756 aa17.3■□□□□ 0.36
USH1C-201ENST00000005226 LMBRD1Q9NUN5 540 aa17.3■□□□□ 0.36
USH1C-201ENST00000005226 MLECQ14165 292 aa17.29■□□□□ 0.36
USH1C-201ENST00000005226 HSP90AA2PQ14568 343 aaPredicted RBP17.29■□□□□ 0.36
USH1C-201ENST00000005226 INTS3Q68E01 1043 aaKnown RBP17.29■□□□□ 0.36
USH1C-201ENST00000005226 WASLO00401 505 aaPredicted RBP17.29■□□□□ 0.36
USH1C-201ENST00000005226 NUDT16Q96DE0 195 aaKnown RBP17.29■□□□□ 0.36
USH1C-201ENST00000005226 CLTCQ00610 1675 aaKnown RBP17.29■□□□□ 0.36
USH1C-201ENST00000005226 LMOD3Q0VAK6 560 aa17.28■□□□□ 0.36
USH1C-201ENST00000005226 F6X3S4 739 aa17.28■□□□□ 0.36
USH1C-201ENST00000005226 PTMSP20962 102 aa17.28■□□□□ 0.36
USH1C-201ENST00000005226 ZSCAN23Q3MJ62 389 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms