RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 HSP90AA4PQ58FG1 418 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 ARTNQ5T4W7 220 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 ELOA2Q8IYF1 753 aaPredicted RBP15.18■□□□□ 0.02
SYNE2-228ENST00000639659 FAM71AQ8IYT1 594 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 EXOC2Q96KP1 924 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 TMEM74Q96NL1 305 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 MAGEB5Q9BZ81 275 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 EDEM3Q9BZQ6 932 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 LRRN3Q9H3W5 708 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 PPARGC1AQ9UBK2 798 aaKnown RBP15.18■□□□□ 0.02
SYNE2-228ENST00000639659 KLQ9UEF7 1012 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 IL17BQ9UHF5 180 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 OR1A2Q9Y585 309 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 FHOD1Q9Y613 1164 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 NAV2Q8IVL1 2488 aa15.18■□□□□ 0.02
SYNE2-228ENST00000639659 BOD1L1Q8NFC6 3051 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 A0A1W2PQM1 296 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 GTPBP10A4D1E9 387 aaKnown RBP15.17■□□□□ 0.02
SYNE2-228ENST00000639659 FAM72CH0Y354 149 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 TMX2-CTNND1H3BSU7 103 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PIGNO95427 931 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 MMEP08473 750 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 LIPCP11150 499 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PRKCSHP14314 528 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-228ENST00000639659 RHOQP17081 205 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 SRP54P61011 504 aaKnown RBP15.17■□□□□ 0.02
SYNE2-228ENST00000639659 CYP4F2P78329 520 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 LRRC14Q15048 493 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 CFAP58Q5T655 872 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PHF19Q5T6S3 580 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 FAM72AQ5TYM5 149 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 FAM72DQ6L9T8 149 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 FAM72BQ86X60 149 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 ZFAND4Q86XD8 727 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 CCNJLQ8IV13 435 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PAF1Q8N7H5 531 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 TBC1D31Q96DN5 1066 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 TBATAQ96M53 351 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 MAGEH1Q9H213 219 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 SUDS3Q9H7L9 328 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-228ENST00000639659 SEPT10Q9P0V9 454 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 TMEM59LQ9UK28 342 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PCDHGA7Q9Y5G6 932 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 ANKRD36A6QL64 1941 aa15.17■□□□□ 0.02
SYNE2-228ENST00000639659 PRAMEF33A0A0G2JMD5 474 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 B4DGG1 531 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 INSIG1O15503 277 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 NOBOXO60393 691 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 PRAMEF10O60809 474 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 GADD45BO75293 160 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-228ENST00000639659 LRIG2O94898 1065 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 PRKCGP05129 697 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 TIMP2P16035 220 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 SDC4P31431 198 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 CDH5P33151 784 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-228ENST00000639659 NFATC4Q14934 902 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 CAMK4Q16566 473 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 ATG14Q6ZNE5 492 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 NOP9Q86U38 636 aaKnown RBP15.16■□□□□ 0.02
SYNE2-228ENST00000639659 NLRP14Q86W24 1093 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 PLPP6Q8IY26 295 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 ZSCAN1Q8NBB4 408 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 RXFP2Q8WXD0 754 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 JPH3Q8WXH2 748 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-228ENST00000639659 PDXPQ96GD0 296 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 TMEM51Q9NW97 253 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 TMEM248Q9NWD8 314 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 MOSPD1Q9UJG1 213 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 PCDHB11Q9Y5F2 797 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 LRRK1Q38SD2 2015 aa15.16■□□□□ 0.02
SYNE2-228ENST00000639659 LRP4O75096 1905 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 KDELR3O43731 214 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 TNFP01375 233 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 ADRA1BP35368 520 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 ETV5P41161 510 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 ELP6Q0PNE2 266 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 INPP5AQ14642 412 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 MAN2A1Q16706 1144 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 WSCD2Q2TBF2 565 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 MAP9Q49MG5 647 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 MANEALQ5VSG8 457 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 TAF8Q7Z7C8 310 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 IRF2BP1Q8IU81 584 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 SFTPA2Q8IWL1 248 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 CCDC185Q8N715 623 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 GPT2Q8TD30 523 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 USP7Q93009 1102 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 WDR92Q96MX6 357 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 C11orf70Q9BRQ4 267 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 APOOQ9BUR5 198 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 TTYH3Q9C0H2 523 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 FOXJ2Q9P0K8 574 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 PCDHGA4Q9Y5G9 962 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 SCN8AQ9UQD0 1980 aa15.15■□□□□ 0.02
SYNE2-228ENST00000639659 AHCTF1Q8WYP5 2266 aa15.14■□□□□ 0.01
SYNE2-228ENST00000639659 TMEM110-MUSTN1A8MSY1 372 aa15.14■□□□□ 0.01
SYNE2-228ENST00000639659 TOR1BO14657 336 aa15.14■□□□□ 0.01
SYNE2-228ENST00000639659 LSM8O95777 96 aaKnown RBP15.14■□□□□ 0.01
SYNE2-228ENST00000639659 PLEKP08567 350 aaPredicted RBP15.14■□□□□ 0.01
SYNE2-228ENST00000639659 CCKBRP32239 447 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms