RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 VPS36Q86VN1 386 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 UMODL1-AS1Q8N2C9 162 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 RYBPQ8N488 228 aaPredicted RBP16.61■□□□□ 0.25
CLN3-255ENST00000637100 CCDC185Q8N715 623 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 ARL10Q8N8L6 244 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 RTL3Q8N8U3 475 aaKnown RBP16.61■□□□□ 0.25
CLN3-255ENST00000637100 OR6C4Q8NGE1 309 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 GPT2Q8TD30 523 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 EDEM3Q9BZQ6 932 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 KLC2Q9H0B6 622 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 LHX3Q9UBR4 397 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 RABGEF1Q9UJ41 708 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 A0A1W2PQM1 296 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 TCRBV5S1A1TA0A578 114 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 CFAP69A5D8W1 941 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 TMX2-CTNND1H3BSU7 103 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 PLD2O14939 933 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 CELA2BP08218 269 aaPredicted RBP16.6■□□□□ 0.25
CLN3-255ENST00000637100 ALPIP09923 528 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 RFC1P35251 1148 aaPredicted RBP16.6■□□□□ 0.25
CLN3-255ENST00000637100 JAM2P57087 298 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 RAD51Q06609 339 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 SERINC3Q13530 473 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 SPIDRQ14159 915 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 ALG11Q2TAA5 492 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 FAXCQ5TGI0 409 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 RWDD4Q6NW29 188 aaKnown RBP16.6■□□□□ 0.25
CLN3-255ENST00000637100 CRTC1Q6UUV9 634 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 CCDC81Q6ZN84 652 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 GPR156Q8NFN8 814 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 SLC20A1Q8WUM9 679 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 CCNL2Q96S94 520 aaPredicted RBP16.6■□□□□ 0.25
CLN3-255ENST00000637100 DAAM1Q9Y4D1 1078 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 DGKBQ9Y6T7 804 aa16.6■□□□□ 0.25
CLN3-255ENST00000637100 D6RAR5 112 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 NVLO15381 856 aaKnown RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 BUB1O43683 1085 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 IGSF6O95976 241 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 EEF1GP26641 437 aaKnown RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 ZFP36L1Q07352 338 aaKnown RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 ELP6Q0PNE2 266 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 GRM3Q14832 879 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 NFATC4Q14934 902 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 LRRC14Q15048 493 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 IRF4Q15306 451 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 CYTH1Q15438 398 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 UGP2Q16851 508 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 CDO1Q16878 200 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 TPD52L1Q16890 204 aaPredicted RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 DPCR1Q3MIW9 517 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 TRIM72Q6ZMU5 477 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 LEKR1Q6ZMV7 388 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 B3GNT8Q7Z7M8 397 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 CXorf40AQ8TE69 158 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 SCG3Q8WXD2 468 aaKnown RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 RBM15Q96T37 977 aaKnown RBP eCLIP16.59■□□□□ 0.25
CLN3-255ENST00000637100 APOOQ9BUR5 198 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 PDFQ9HBH1 243 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 SAMSN1Q9NSI8 373 aaKnown RBP16.59■□□□□ 0.25
CLN3-255ENST00000637100 APPL1Q9UKG1 709 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 AHCTF1Q8WYP5 2266 aa16.59■□□□□ 0.25
CLN3-255ENST00000637100 LRP4O75096 1905 aa16.58■□□□□ 0.25
CLN3-255ENST00000637100 RASGRP1O95267 797 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 HOXC4P09017 264 aaPredicted RBP16.58■□□□□ 0.24
CLN3-255ENST00000637100 KRT3P12035 628 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 PNLIPP16233 465 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 UGT1A5P35504 534 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 CSNK1DP48730 415 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 PARP15Q460N3 678 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 TCP11X2Q5H9J9 407 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 LRRC73Q5JTD7 316 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 KIAA1614Q5VZ46 1190 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 WDR59Q6PJI9 974 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 RAB11FIP2Q7L804 512 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 SLFN11Q7Z7L1 901 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 PHF13Q86YI8 300 aaPredicted RBP16.58■□□□□ 0.24
CLN3-255ENST00000637100 EXD3Q8N9H8 876 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 KYQ8NBH2 561 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 C3orf20Q8ND61 904 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 PCDH19Q8TAB3 1148 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 SLC30A5Q8TAD4 765 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 FAM172AQ8WUF8 416 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 ZNF641Q96N77 438 aaPredicted RBP16.58■□□□□ 0.24
CLN3-255ENST00000637100 PCDHB18PQ96TA0 734 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 B3GNT4Q9C0J1 378 aa16.58■□□□□ 0.24
CLN3-255ENST00000637100 SIGLEC16A6NMB1 481 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 RASA4BC9J798 803 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 INSIG1O15503 277 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 RASA4O43374 803 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 GJB6O95452 261 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SLC5A2P31639 672 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SOX5P35711 763 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 TRIM23P36406 574 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 AIF1P55008 147 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 SRP54P61011 504 aaKnown RBP16.57■□□□□ 0.24
CLN3-255ENST00000637100 RHOAP61586 193 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 CCL7P80098 99 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 MTM1Q13496 603 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 LINC00303Q3SY05 128 aa16.57■□□□□ 0.24
CLN3-255ENST00000637100 GKN2Q86XP6 184 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms