RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZNF567Q8N184 647 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 CPSF7Q8N684 471 aaKnown RBP4.02□□□□□ -1.77
SCN1A-214ENST00000637038 C12orf29Q8N999 325 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 BHLHE22Q8NFJ8 381 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-214ENST00000637038 PPTC7Q8NI37 304 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 SLC2A14Q8TDB8 520 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 NCSTNQ92542 709 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 SEPT8Q92599 483 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 C18orf25Q96B23 403 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-214ENST00000637038 NRBF2Q96F24 287 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 ELMO2Q96JJ3 720 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 DDX50Q9BQ39 737 aaKnown RBP4.02□□□□□ -1.77
SCN1A-214ENST00000637038 GATA5Q9BWX5 397 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-214ENST00000637038 DUSP16Q9BY84 665 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF696Q9H7X3 374 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 CASS4Q9NQ75 786 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 ENTPD7Q9NQZ7 604 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 PNPLA3Q9NST1 481 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 TBC1D13Q9NVG8 400 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 DLL3Q9NYJ7 618 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 MYRFQ9Y2G1 1151 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM98Q9Y2Y6 226 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 AP4S1Q9Y587 144 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 MTCH2Q9Y6C9 303 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 SHROOM3Q8TF72 1996 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 SCN8AQ9UQD0 1980 aa4.02□□□□□ -1.77
SCN1A-214ENST00000637038 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 ZBTB42B2RXF5 422 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 MATN2O00339 956 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 UBDO15205 165 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 BUD23O43709 281 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 CLASP2O75122 1294 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 BCAS2O75934 225 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 CHEK2O96017 543 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 VTNP04004 478 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PIM1P11309 404 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RANBP1P43487 201 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 LHX1P48742 406 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RAB10P61026 200 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PSME3P61289 254 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 MRPS22P82650 360 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 POU4F1Q01851 419 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PPIDQ08752 370 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SMAD2Q15796 467 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 GRIK4Q16099 956 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 DGKDQ16760 1214 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TRIM60Q495X7 471 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SPATS1Q496A3 300 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 AASDHQ4L235 1098 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 GLRA4Q5JXX5 417 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 FOXB2Q5VYV0 432 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 FSTL4Q6MZW2 842 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 LRRC8EQ6NSJ5 796 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TRNP1Q6NT89 227 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 KIAA0408Q6ZU52 694 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RNF168Q8IYW5 571 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TMEM86AQ8N2M4 240 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 CCDC185Q8N715 623 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF781Q8N8C0 355 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 AGR3Q8TD06 166 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 KCTD13Q8WZ19 329 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 NMD3Q96D46 503 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RMND5BQ96G75 393 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 LENG8Q96PV6 779 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 HNRNPABQ99729 332 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 OSBPL6Q9BZF3 934 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 MUC13Q9H3R2 512 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 HIPK3Q9H422 1215 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SCUBE2Q9NQ36 999 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SUCOQ9UBS9 1254 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SCAF8Q9UPN6 1271 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 LZTS1Q9Y250 596 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 ITM2BQ9Y287 266 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 DOCK4Q8N1I0 1966 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TYW5A2RUC4 315 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 FGF10O15520 208 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RNASEH1O60930 286 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 VPS4BO75351 444 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 TPPPO94811 219 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 VAPBO95292 243 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 WARSP23381 471 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PTPN3P26045 913 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 ADRA1BP35368 520 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 NDUFV1P49821 464 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RAB15P59190 212 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 CRADDP78560 199 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 USP4Q13107 963 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SEPT6Q14141 434 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PKDCCQ504Y2 493 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 SFT2D3Q587I9 215 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RNF111Q6ZNA4 994 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 RBM44Q6ZP01 1051 aaKnown RBP4.01□□□□□ -1.77
SCN1A-214ENST00000637038 FRMD7Q6ZUT3 714 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF534Q76KX8 674 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 CMC1Q7Z7K0 106 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PIGZQ86VD9 579 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PLPP6Q8IY26 295 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 GALNT4Q8N4A0 578 aa4.01□□□□□ -1.77
SCN1A-214ENST00000637038 PACRGLQ8N7B6 248 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms