RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TRIM68Q6AZZ1 485 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 MICALCLQ6ZW33 695 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 NAT16Q8N8M0 369 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 ZNF557Q8N988 423 aaPredicted RBP16.99■□□□□ 0.31
CLN3-252ENST00000636907 SMARCD2Q92925 531 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 RMDN1Q96DB5 314 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 RPL10LQ96L21 214 aaKnown RBP16.99■□□□□ 0.31
CLN3-252ENST00000636907 RBBP8Q99708 897 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 KCTD3Q9Y597 815 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 CXorf51AA0A1B0GTR3 108 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 TRIM24O15164 1050 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 ZNF821O75541 412 aaPredicted RBP16.98■□□□□ 0.31
CLN3-252ENST00000636907 CYP17A1P05093 508 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 ITGA2BP08514 1039 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 SRCP12931 536 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 SEC24CP53992 1094 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 WDR4P57081 412 aaKnown RBP16.98■□□□□ 0.31
CLN3-252ENST00000636907 EML3Q32P44 896 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 TIFABQ6ZNK6 161 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 METTL3Q86U44 580 aaKnown RBP16.98■□□□□ 0.31
CLN3-252ENST00000636907 CNTN4Q8IWV2 1026 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 KIAA1958Q8N8K9 716 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 LPCAT1Q8NF37 534 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 OR13J1Q8NGT2 312 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 GDAP1Q8TB36 358 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 BRSK1Q8TDC3 778 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 ASIC4Q96FT7 647 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 SGSM3Q96HU1 749 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 APOPT1Q96IL0 206 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 EPN3Q9H201 632 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 RABEP2Q9H5N1 569 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLN3-252ENST00000636907 GGT7Q9UJ14 662 aa16.98■□□□□ 0.31
CLN3-252ENST00000636907 CCNFP41002 786 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 AP1S1P61966 158 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 DGKKQ5KSL6 1271 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 NLRP9Q7RTR0 991 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ST13P5Q8NFI4 369 aaPredicted RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 OR6K2Q8NGY2 324 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 BPIFB1Q8TDL5 484 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 PDCD6IPQ8WUM4 868 aaKnown RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 DYDC1Q8WWB3 177 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SMIM14Q96QK8 99 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 MCMBPQ9BTE3 642 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 TNKS2Q9H2K2 1166 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 NSMCE4AQ9NXX6 385 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 GDE1Q9NZC3 331 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 EVLQ9UI08 416 aaPredicted RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 HS3ST2Q9Y278 367 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SPO11Q9Y5K1 396 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ARL5AQ9Y689 179 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ANKRD36A6QL64 1941 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SRRM3A6NNA2 597 aaPredicted RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 SIN3BO75182 1162 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ZWINTO95229 277 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ASMTLO95671 621 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ALDOAP04075 364 aaKnown RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 ADH5P11766 374 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SPRP35270 261 aaPredicted RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 ABCG1P45844 678 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 CSNK1DP48730 415 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 NEK3P51956 506 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 LIMK2P53671 638 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 CSE1LP55060 971 aaKnown RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 DNAJC3Q13217 504 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 THOC5Q13769 683 aaKnown RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 DMC1Q14565 340 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 KIAA0907Q7Z7F0 614 aaPredicted RBP16.97■□□□□ 0.31
CLN3-252ENST00000636907 ADIPOR2Q86V24 386 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 TAX1BP1Q86VP1 789 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 DENND6AQ8IWF6 608 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLN3-252ENST00000636907 TCP10LQ8TDR4 215 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ATXN7L3BQ96GX2 97 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ZFYVE19Q96K21 471 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 ADGRE3Q9BY15 652 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SLC2A11Q9BYW1 496 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 CCDC134Q9H6E4 229 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 SLC25A13Q9UJS0 675 aa16.97■□□□□ 0.31
CLN3-252ENST00000636907 HEPACAM2A8MVW5 462 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 CCL22O00626 93 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 TPP1O14773 563 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 BUD23O43709 281 aaKnown RBP16.96■□□□□ 0.31
CLN3-252ENST00000636907 FZD6O60353 706 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 IGSF6O95976 241 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 ARSAP15289 507 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 FCARP24071 287 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 GKP32189 559 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 SLC8A1P32418 973 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 ARSDP51689 593 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 MPP1Q00013 466 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 ACVR1Q04771 509 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 CTBP1Q13363 440 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 LAMB3Q13751 1172 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 PTPRCAPQ14761 206 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 QPCTQ16769 361 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 TMEM215Q68D42 235 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 CKAP2Q8WWK9 683 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 PTPRN2Q92932 1015 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 C12orf65Q9H3J6 166 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms