RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 GALNT1Q10472 559 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 KIF5AQ12840 1032 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 GPS2Q13227 327 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 BIRC3Q13489 604 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TDGQ13569 410 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SLC12A1Q13621 1099 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 BYSLQ13895 437 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RUNX2Q13950 521 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SLC39A14Q15043 492 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 EEA1Q15075 1411 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PWP2Q15269 919 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ZRSR2Q15696 482 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 AP5B1Q2VPB7 878 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 FER1L6Q2WGJ9 1857 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TBRG1Q3YBR2 411 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 C5orf22Q49AR2 442 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TTC39AQ5SRH9 613 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM83BQ5T0W9 1011 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 MYOM3Q5VTT5 1437 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TMEM268Q5VZI3 342 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ZNF772Q68DY9 489 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ISM2Q6H9L7 571 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 WBP2NLQ6ICG8 309 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ERAP2Q6P179 960 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 MTFR2Q6P444 385 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 AAGABQ6PD74 315 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RINLQ6ZS11 566 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RNF144BQ7Z419 303 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 CAMK1DQ8IU85 385 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 LURAP1LQ8IV03 231 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 FTSJ3Q8IY81 847 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 CACNA2D3Q8IZS8 1091 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM185AQ8N0U4 392 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 OR4N4Q8N0Y3 316 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 VPS8Q8N3P4 1428 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TMEM57Q8N5G2 664 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 HORMAD2Q8N7B1 307 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ENDOVQ8N8Q3 282 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 LRRC57Q8N9N7 239 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 MIGA1Q8NAN2 632 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SPATA5Q8NB90 893 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 DNAAF1Q8NEP3 725 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 LINS1Q8NG48 757 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TRAPPC12Q8WVT3 735 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ADAMTS14Q8WXS8 1223 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ARAP2Q8WZ64 1704 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 GBF1Q92538 1859 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 KAT2AQ92830 837 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RILPL2Q969X0 211 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ANKRD9Q96BM1 317 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 EID2BQ96D98 161 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RTP4Q96DX8 246 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 URB1-AS1Q96HZ7 61 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ZSCAN31Q96LW9 406 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PAAF1Q9BRP4 392 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 WDR83Q9BRX9 315 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 POLDIP3Q9BY77 421 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 LDHAL6BQ9BYZ2 381 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 XRN2Q9H0D6 950 aaKnown RBP eCLIP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PABPC3Q9H361 631 aaKnown RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 HIPK3Q9H422 1215 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 NOD2Q9HC29 1040 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PTPRHQ9HD43 1115 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 KRCC1Q9NPI7 259 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SCRT2Q9NQ03 307 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PRDM8Q9NQV8 689 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ITM2CQ9NQX7 267 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 THAP1Q9NVV9 213 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ALKBH4Q9NXW9 302 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 DONSONQ9NYP3 566 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SEMA5BQ9P283 1151 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TBC1D14Q9P2M4 693 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 KLQ9UEF7 1012 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RGS17Q9UGC6 210 aaPredicted RBP1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 FZD10Q9ULW2 581 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 RIPOR2Q9Y4F9 1068 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 SCN4AP35499 1836 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 ATAD5Q96QE3 1844 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 DLC1Q96QB1 1528 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 TULP4Q9NRJ4 1543 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 MTUS2Q5JR59 1369 aa1.19□□□□□ -2.22
SMARCB1-209ENST00000635578 PXDNQ92626 1479 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MYO5AQ9Y4I1 1855 aaKnown RBP1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MST1RQ04912 1400 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 FGD6Q6ZV73 1430 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ADAMTS13Q76LX8 1427 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ERBINQ96RT1 1412 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 NUP98P52948 1817 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 CYP3A7-CYP3A51PA0A087WV96 503 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 TYW5A2RUC4 315 aaKnown RBP1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM90A18PA6NE21 464 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 TMEM247A6NEH6 219 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM90A16PA6NEW6 464 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MBD3L5A6NJ08 208 aaPredicted RBP1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 NPIPB13A6NJU9 1138 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM90A9PA6NNJ1 464 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 NPIPB5A8MRT5 1133 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 FAM90A5PA8MXJ8 464 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 NPIPB4C9JG80 1138 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 STX16-NPEPL1H3BU86 382 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms