RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 OLFM1Q99784 485 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 NOL6Q9H6R4 1146 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 EML4Q9HC35 981 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SPON1Q9HCB6 807 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SFMBT1Q9UHJ3 866 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 IPO11Q9UI26 975 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 HS3ST4Q9Y661 456 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SMIM31A0A1B0GVY4 71 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MYADML2A6NDP7 307 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 A8MT66 165 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 WISP3O95389 354 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 RBP1P09455 135 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 LTA4HP09960 611 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SMIM18P0DKX4 95 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 KCNA5P22460 613 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 RAB27AP51159 221 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MLLT6P55198 1093 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SEPT6Q14141 434 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 PTK2BQ14289 1009 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 CSHL1Q14406 222 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SQLEQ14534 574 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 RASIP1Q5U651 963 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 OVOS1Q6IE37 1185 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 GDF6Q6KF10 455 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 AFAP1L2Q8N4X5 818 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 GABPB2Q8TAK5 448 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 HMGCLL1Q8TB92 370 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 USP13Q92995 863 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TOP1MTQ969P6 601 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SGF29Q96ES7 293 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TSPAN17Q96FV3 270 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 NPAS2Q99743 824 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MTG1Q9BT17 334 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SUDS3Q9H7L9 328 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 AGO3Q9H9G7 860 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MRPL40Q9NQ50 206 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 NDUFA13Q9P0J0 144 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 PCDHGA7Q9Y5G6 932 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 NEMP2A6NFY4 417 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 STX16-NPEPL1H3BU86 382 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 PENKP01210 267 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TYMPP19971 482 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TSPY1Q01534 308 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TNK2Q07912 1038 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MAPRE2Q15555 327 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF789Q5FWF6 425 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF280DQ6N043 979 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SERINC5Q86VE9 423 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 THEM5Q8N1Q8 247 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 UMODL1-AS1Q8N2C9 162 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 ASB9Q96DX5 294 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SUSD3Q96L08 255 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 UROC1Q96N76 676 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 MRPL1Q9BYD6 325 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 UNKQ9C0B0 810 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 ATXN3LQ9H3M9 355 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 VPS45Q9NRW7 570 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 GTSE1Q9NYZ3 720 aa12.86□□□□□ -0.35
LINC00540-203ENST00000631321 SUCOQ9UBS9 1254 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 CNOT11Q9UKZ1 510 aaKnown RBP12.86□□□□□ -0.35
LINC00540-203ENST00000631321 TXNDC9O14530 226 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 DUSP11O75319 330 aaKnown RBP12.85□□□□□ -0.35
LINC00540-203ENST00000631321 CRTAMO95727 393 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 POMCP01189 267 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 C8BP07358 591 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 CTSHP09668 335 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 HNRNPLP14866 589 aaKnown RBP eCLIP12.85□□□□□ -0.352e-22■■■■■ 66.9
LINC00540-203ENST00000631321 SLC26A3P40879 764 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 RGS2P41220 211 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 HSPA13P48723 471 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 SERPINH1P50454 418 aaKnown RBP12.85□□□□□ -0.35
LINC00540-203ENST00000631321 NDST2P52849 883 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 PSME3P61289 254 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 STX5Q13190 355 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 TUSC3Q13454 348 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 LRP8Q14114 963 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 DSC3Q14574 896 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 ACAP2Q15057 778 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 PAN2Q504Q3 1202 aaKnown RBP12.85□□□□□ -0.35
LINC00540-203ENST00000631321 KLC3Q6P597 504 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 GK5Q6ZS86 529 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 CUZD1Q86UP6 607 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 SLC22A9Q8IVM8 553 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF683Q8IZ20 524 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 TMEM102Q8N9M5 508 aaPredicted RBP12.85□□□□□ -0.35
LINC00540-203ENST00000631321 OR13J1Q8NGT2 312 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 KLHL32Q96NJ5 620 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 SERPINB11Q96P15 392 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 PKP2Q99959 881 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 TRMOQ9BU70 441 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 NMUR1Q9HB89 426 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 TNFRSF12AQ9NP84 129 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 MPP6Q9NZW5 540 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 HACD3Q9P035 362 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 CLEC11AQ9Y240 323 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 COMMD3-BMI1R4GMX3 469 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 PATJQ8NI35 1801 aa12.85□□□□□ -0.35
LINC00540-203ENST00000631321 ARHGEF37A1IGU5 675 aa12.84□□□□□ -0.35
LINC00540-203ENST00000631321 MROH6A6NGR9 719 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms