RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 NAPEPLDQ6IQ20 393 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 IL27RAQ6UWB1 636 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 UBL4BQ8N7F7 174 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 UBE2Q2Q8WVN8 375 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 SLC6A18Q96N87 628 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 LGMNQ99538 433 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 POLR1EQ9GZS1 481 aaKnown RBP20.91■□□□□ 0.94
CLN3-240ENST00000631023 FSCN3Q9NQT6 498 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 SLCO1B1Q9Y6L6 691 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 hCG_1818297A0A087WSY0 165 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 A0A1W2PQ67 120 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 TSPAN11A1L157 253 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 MIF4GDA9UHW6 222 aaKnown RBP20.9■□□□□ 0.94
CLN3-240ENST00000631023 SLC30A4O14863 429 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 AREL1O15033 823 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 CD38P28907 300 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 C21orf59P57076 290 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 MAXP61244 160 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 AP1B1Q10567 949 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 GRIK2Q13002 908 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 LLGL1Q15334 1064 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 UGP2Q16851 508 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 ZNF284Q2VY69 593 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 P3H4Q92791 437 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 RTKNQ9BST9 563 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 GUCA1BQ9UMX6 200 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 EFR3BQ9Y2G0 817 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 PCNX2A6NKB5 2137 aa20.9■□□□□ 0.94
CLN3-240ENST00000631023 A0A1B0GVT2 93 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 C4orf47A7E2U8 309 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 UPK3BL1B0FP48 263 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 UPK3BL2E5RIL1 263 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 CDX4O14627 284 aaPredicted RBP20.89■□□□□ 0.94
CLN3-240ENST00000631023 VILLO15195 856 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 SLC31A1O15431 190 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 SOCS5O75159 536 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 ID4P47928 161 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 PEX5P50542 639 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 SGCGQ13326 291 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 PUM1Q14671 1186 aaKnown RBP eCLIP20.89■□□□□ 0.94
CLN3-240ENST00000631023 STAT4Q14765 748 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 TMEM259Q4ZIN3 620 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 SEL1L3Q68CR1 1132 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 ERAP2Q6P179 960 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 NPNTQ6UXI9 565 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 KLK6Q92876 244 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 RMDN1Q96DB5 314 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 ECHDC3Q96DC8 303 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 OLFM3Q96PB7 478 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 SLC17A9Q9BYT1 436 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 NOD2Q9HC29 1040 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 ZFR2Q9UPR6 939 aaKnown RBP20.89■□□□□ 0.94
CLN3-240ENST00000631023 ANKRD6Q9Y2G4 727 aa20.89■□□□□ 0.94
CLN3-240ENST00000631023 TDRD6O60522 2096 aaKnown RBP20.89■□□□□ 0.93
CLN3-240ENST00000631023 GJB3O75712 270 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 AKT2P31751 481 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 CCZ1BP86790 482 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 CCZ1P86791 482 aaPredicted RBP20.89■□□□□ 0.93
CLN3-240ENST00000631023 CCDC181Q5TID7 509 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 ZNF662Q6ZS27 426 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 MINDY1Q8N5J2 469 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 MFSD2AQ8NA29 543 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 SEMA3CQ99985 751 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 DLL3Q9NYJ7 618 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 TTLL3Q9Y4R7 772 aa20.89■□□□□ 0.93
CLN3-240ENST00000631023 TTC24A2A3L6 582 aaPredicted RBP20.88■□□□□ 0.93
CLN3-240ENST00000631023 TRAFD1O14545 582 aaPredicted RBP20.88■□□□□ 0.93
CLN3-240ENST00000631023 MAGEC1O60732 1142 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 CER1O95813 267 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 JCHAINP01591 159 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 PRLRP16471 622 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 HNRNPA2B1P22626 353 aaKnown RBP20.88■□□□□ 0.93
CLN3-240ENST00000631023 NFKBIAP25963 317 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 IFI35P80217 286 aaPredicted RBP20.88■□□□□ 0.93
CLN3-240ENST00000631023 OVGP1Q12889 678 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 LRRC73Q5JTD7 316 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 CXorf40AQ8TE69 158 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 LRRN4Q8WUT4 740 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 HEMGNQ9BXL5 484 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 SAE1Q9UBE0 346 aaPredicted RBP20.88■□□□□ 0.93
CLN3-240ENST00000631023 ITM2BQ9Y287 266 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 PCDHGC4Q9Y5F7 938 aa20.88■□□□□ 0.93
CLN3-240ENST00000631023 IGLON5A6NGN9 336 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 KCNK1O00180 336 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 HTRA2O43464 458 aaPredicted RBP20.87■□□□□ 0.93
CLN3-240ENST00000631023 OPHN1O60890 802 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 FTCDO95954 541 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 PTPN7P35236 360 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 KIF19Q2TAC6 998 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 UAP1L1Q3KQV9 507 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 ALG1LQ6GMV1 187 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 BBS12Q6ZW61 710 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 IQCHQ86VS3 1027 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 FAM174AQ8TBP5 190 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 PDCD6IPQ8WUM4 868 aaKnown RBP20.87■□□□□ 0.93
CLN3-240ENST00000631023 TFB1MQ8WVM0 346 aaKnown RBP20.87■□□□□ 0.93
CLN3-240ENST00000631023 ASB12Q8WXK4 309 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 SPOCK2Q92563 424 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 IL12RB2Q99665 862 aa20.87■□□□□ 0.93
CLN3-240ENST00000631023 C1QTNF7Q9BXJ2 289 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms