RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TDRD1Q9BXT4 1180 aaKnown RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 AASDHPPTQ9NRN7 309 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 SAE1Q9UBE0 346 aaPredicted RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 MYH7P12883 1935 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 GOLGA4Q13439 2230 aaKnown RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 PRKD3O94806 890 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 ANGPTL1O95841 491 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 ITGAXP20702 1163 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 PSMB4P28070 264 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 TAS2R40P59535 323 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 DDX39BQ13838 428 aaKnown RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 DALRD3Q5D0E6 543 aaKnown RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 NPNTQ6UXI9 565 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 ZPBP2Q6X784 338 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 ZNF621Q6ZSS3 439 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 BRSK2Q8IWQ3 736 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 KCTD4Q8WVF5 259 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 BIRC8Q96P09 236 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 MED28Q9H204 178 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 PIDD1Q9HB75 910 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 KCNQ5Q9NR82 932 aa8.97□□□□□ -0.97
VCL-206ENST00000623461 SAMHD1Q9Y3Z3 626 aaKnown RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 CEP170BQ9Y4F5 1589 aaPredicted RBP8.97□□□□□ -0.97
VCL-206ENST00000623461 C19orf81C9J6K1 198 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 TSPAN4O14817 238 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 AZIN1O14977 448 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 FSTL1Q12841 308 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SHROOM1Q2M3G4 852 aaPredicted RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 POTEHQ6S545 545 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 ILDR2Q71H61 639 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 YAF2Q8IY57 180 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SLCO2A1Q92959 643 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 INTS10Q9NVR2 710 aaKnown RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 AHSPQ9NZD4 102 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 A0A087WZ62 844 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 H3BMM5 538 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SLC22A3O75751 556 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 PRKD1Q15139 912 aaPredicted RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 MED22Q15528 200 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SEZ6Q53EL9 994 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 MARC1Q5VT66 337 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 CYP2U1Q7Z449 544 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 NT5DC4Q86YG4 428 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 HS6ST3Q8IZP7 471 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 CDYL2Q8N8U2 506 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 OR52K1Q8NGK4 314 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 LENG8Q96PV6 779 aaPredicted RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 ALG9Q9H6U8 611 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 NT5MQ9NPB1 228 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 NMRK2Q9NPI5 230 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SPATA7Q9P0W8 599 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 PCDHB12Q9Y5F1 795 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 PIK3C2BO00750 1634 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 CCDC189A1A4V9 331 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 AIREO43918 545 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SERPINF2P08697 491 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 STAG3L1P0CL83 205 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 PORP16435 677 aaPredicted RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 MYL9P24844 172 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 CASP7P55210 303 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 SLC9A4Q6AI14 798 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 PTGR2Q8N8N7 351 aaPredicted RBP8.96□□□□□ -0.97
VCL-206ENST00000623461 MCOLN3Q8TDD5 553 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 TMEM59LQ9UK28 342 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 POLIQ9UNA4 740 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 COG5Q9UP83 839 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 TRAF6Q9Y4K3 522 aa8.96□□□□□ -0.97
VCL-206ENST00000623461 TTLL13PA6NNM8 815 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 H3BSA7 217 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 PRMT5O14744 637 aaPredicted RBP8.96□□□□□ -0.98
VCL-206ENST00000623461 ORC5O43913 435 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 PABPC4LP0CB38 370 aaKnown RBP8.96□□□□□ -0.98
VCL-206ENST00000623461 GTF2BQ00403 316 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 MERTKQ12866 999 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 RALGPS1Q5JS13 557 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ZYG11AQ6WRX3 759 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ZNF410Q86VK4 478 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 IZUMO1Q8IYV9 350 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 CENPSQ8N2Z9 138 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 C4orf32Q8N8J7 132 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 REPS1Q96D71 796 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 TRPV5Q9NQA5 729 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 CCDC177Q9NQR7 707 aaPredicted RBP8.96□□□□□ -0.98
VCL-206ENST00000623461 CMTM6Q9NX76 183 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 LSM7Q9UK45 103 aaKnown RBP8.96□□□□□ -0.98
VCL-206ENST00000623461 TLL2Q9Y6L7 1015 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 BTN3A1O00481 513 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 IGFBP5P24593 272 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 C6orf183Q5T699 404 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 RNASEH2BQ5TBB1 312 aaKnown RBP8.96□□□□□ -0.98
VCL-206ENST00000623461 CCDC185Q8N715 623 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 CHST13Q8NET6 341 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 MIEF1Q9NQG6 463 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 PCNAP12004 261 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 CYP2A7P20853 494 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 RCVRNP35243 200 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 GLYATQ6IB77 296 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ERICH5Q6P6B1 374 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 SYCE2Q6PIF2 218 aa8.96□□□□□ -0.98
VCL-206ENST00000623461 ADCK2Q7Z695 626 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms