RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FBXL19Q6PCT2 694 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SLC36A4Q6YBV0 504 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF662Q6ZS27 426 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 TTC7BQ86TV6 843 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PLPP6Q8IY26 295 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PELI3Q8N2H9 469 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 OR2T34Q8NGX1 318 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF599Q96NL3 588 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 IL12RB2Q99665 862 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 GORASP1Q9BQQ3 440 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 HDAC8Q9BY41 377 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SGK2Q9HBY8 427 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PCDH12Q9NPG4 1184 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 GMEB2Q9UKD1 530 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SCML1Q9UN30 329 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 APOC4-APOC2K7ER74 178 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 AREL1O15033 823 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 RNGTTO60942 597 aaKnown RBP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PRLP01236 227 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 APOC2P02655 101 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 CFIP05156 583 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 ALPIP09923 528 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 HOXD11P31277 338 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 NEK3P51956 506 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 GDF10P55107 478 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 CLDN2P57739 230 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 NOMO1Q15155 1222 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 KIAA0895LQ68EN5 471 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SYCE1Q8N0S2 351 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 DNASE2BQ8WZ79 361 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 P3H4Q92791 437 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 ECHDC3Q96DC8 303 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 RBM15Q96T37 977 aaKnown RBP eCLIP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 CPEB1Q9BZB8 566 aaKnown RBP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SCUBE2Q9NQ36 999 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PCDHB9Q9Y5E1 797 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 IGLON5A6NGN9 336 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 MMP20O60882 483 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 ATP1A1P05023 1023 aaKnown RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 CTPS1P17812 591 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 CD86P42081 329 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 NSUN2Q08J23 767 aaKnown RBP eCLIP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 RFTN1Q14699 578 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 UGP2Q16851 508 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF284Q2VY69 593 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 MICALCLQ6ZW33 695 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 PRPF39Q86UA1 669 aaKnown RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 SYT12Q8IV01 421 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 SLC35F6Q8N357 371 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 CADM4Q8NFZ8 388 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 NUDCD1Q96RS6 583 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 IL21RQ9HBE5 538 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TM9SF3Q9HD45 589 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 DYRK4Q9NR20 520 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 CHKBQ9Y259 395 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 ATP8A1Q9Y2Q0 1164 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TPRP12270 2363 aaKnown RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 LATO43561 262 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 PAK4O96013 591 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 GM2AP17900 193 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 MX2P20592 715 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TGM2P21980 687 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 IFI35P80217 286 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 BYSLQ13895 437 aaKnown RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TFDP2Q14188 446 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 PDK1Q15118 436 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 SIX1Q15475 284 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TMEM259Q4ZIN3 620 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TPRG1LQ5T0D9 272 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 PRR23CQ6ZRP0 262 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 RFLNAQ6ZTI6 216 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TSPAN33Q86UF1 283 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF567Q8N184 647 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 TAB3Q8N5C8 712 aaPredicted RBP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 MS4A14Q96JA4 679 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 QKIQ96PU8 341 aaKnown RBP eCLIP13.6□□□□□ -0.23
LINC00540-202ENST00000616974 DMXL2Q8TDJ6 3036 aa13.6□□□□□ -0.23
LINC00540-202ENST00000616974 ZZEF1O43149 2961 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 A0A1B0GVT2 93 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 A0A1W2PPC4 97 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 MIF4GDA9UHW6 222 aaKnown RBP13.59□□□□□ -0.23
LINC00540-202ENST00000616974 LHCGRP22888 699 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 PTPN7P35236 360 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 CSNK1DP48730 415 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 BCL2L1Q07817 233 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 RALGDSQ12967 914 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF569Q5MCW4 686 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 PEAR1Q5VY43 1037 aaPredicted RBP13.59□□□□□ -0.23
LINC00540-202ENST00000616974 ALG1LQ6GMV1 187 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 UBL4BQ8N7F7 174 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 GLIS1Q8NBF1 620 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 TFB1MQ8WVM0 346 aaKnown RBP13.59□□□□□ -0.23
LINC00540-202ENST00000616974 C1orf54Q8WWF1 131 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 ANP32BQ92688 251 aaKnown RBP13.59□□□□□ -0.23
LINC00540-202ENST00000616974 WDR24Q96S15 920 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 ATP13A3Q9H7F0 1226 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 CAPN10Q9HC96 672 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 DNPEPQ9ULA0 475 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 RAI2Q9Y5P3 530 aa13.59□□□□□ -0.23
LINC00540-202ENST00000616974 TSPAN11A1L157 253 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms